Thanks,
Poetry is included though in the dependencies that TensorFlow requires...
I checked and the environment seems clean, nothingh in .bashrc
There may other files or dirs of the .file kind that may interfere
I will check
Regards
Roberto
Il giovedì 9 novembre 2023 10:58:04 GMT, Loris Bennett
<[email protected]> ha scritto:
Ciao Roberto,
Roberto Scipioni <[email protected]> writes:
> File "<frozen importlib._bootstrap>", line 1050, in _gcd_import
> File "<frozen importlib._bootstrap>", line 1027, in _find_and_load
> File "<frozen importlib._bootstrap>", line 992, in _find_and_load_unlocked
> File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
> File "<frozen importlib._bootstrap>", line 1050, in _gcd_import
> File "<frozen importlib._bootstrap>", line 1027, in _find_and_load
> File "<frozen importlib._bootstrap>", line 992, in _find_and_load_unlocked
> File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
> File "<frozen importlib._bootstrap>", line 1050, in _gcd_import
> File "<frozen importlib._bootstrap>", line 1027, in _find_and_load
> File "<frozen importlib._bootstrap>", line 992, in _find_and_load_unlocked
> File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
> File "<frozen importlib._bootstrap>", line 1050, in _gcd_import
> File "<frozen importlib._bootstrap>", line 1027, in _find_and_load
> File "<frozen importlib._bootstrap>", line 1004, in _find_and_load_unlocked
> ModuleNotFoundError: No module named 'poetry'
>
> (at easybuild/tools/run.py:681 in parse_cmd_output)
> == 2023-11-06 15:16:45,929 build_log.py:267 INFO ... (took 3 secs)
>
> =========================================
>
> Have you seen this error before?
> I know it can be fixed by installing poetry (pip install ....) under normal
> circumstances but in this case?
> Any idea?
I don't think poetry should appear in this context. Are you sure that
your environment is clean? Are you using a dedicated, minimalistic
account for building software, rather than a personal account, which
might, say, have some fancy stuff going on in .bashrc?
Cheers,
Loris
> Many thanks
> Roberto
>
> Il lunedì 6 novembre 2023 10:19:11 GMT, Loris Bennett
> <[email protected]> ha scritto:
>
> Roberto Scipioni <[email protected]> writes:
>
>> Dear Sir or Madam,
>>
>> I have been trying to install alphafold using Easybuild on Centos 7/8
>> using eb 4.5 4.6 4.8.1 using different Toolchains, different
>>architectures, ....etc to no avail
>>
>> It stops systematically at Tensorflow/Bazel installation and/or in some
>>cases when attempting to install Alphafold at the repo section
>> giving errors about incomplete downloads / wrong EOF etc.
>
> The incomplete downloads / wrong EOF happen when the download went wrong
> and the half-downloaded file is still in .../easybuild/software/... when
> you try again. EasyBuild will see there is a file and won't try to
> download it again. You might want to use
>
> --force-download
>
> to avoid the problem.
>
>> I wonder whether anybody could give me any pointer on how to proceed.
>> Honestly I am not sure where to start ...:-(
>
> I have been successful in installing TensorFlow by submitting the
> following as a Slurm job to one of our GPU nodes:
>
> eb TensorFlow-2.11.0-foss-2022a-CUDA-11.7.0.eb --robot \
> --cuda-compute-capabilities=6.1,7.5 --buildpath=/localscratch \
> --tmpdir=/scratch/eb-build --parallel=${SLURM_CPUS_PER_TASK} --force
>
> We use the local drive '/localscratch' for the build to speed up
> compilation and '/scratch', a large global filesystem, as 'tmpdir' to
> prevent '/tmp' from overflowing. Your compute capabilities may
> obviously be different.
>
> Cheers,
>
> Loris
>
>> Many thanks for your help
>> Kind regards
>>
>> Roberto
>>
>> Dr Roberto Scipioni
>>
>> HPC Managed Services Specialist
>> Red Oak Managed Services
>>
>>
>>
>> A red and white background with white text
>>
>> ________________________________________________________________________
>>
>> T: +44 (0 )1242 806188 or Contact me directly M: +44 (0) 7821656925E:
>> [email protected]
>>
>> *
>>
>> *
>>
>> Bringing innovation and best practice to the world of HPC and Cloud
>> technology since 2004
>>
>> A: 36 Pure Offices, Cheltenham Office Park, Hatherley Lane, Cheltenham, GL51
>> 6SH
>> W: www.redoakconsulting.co.uk
>>
>> __________________________________________________________________________________
>>
>>
>>
>>
>> Diagram
>>
>> Description automatically generated
>>
>> Diagram
>>
>> Description automatically generated
>>
>>
>>
>>
>>
>> *
>>
>> *
>>
>> *
>>
>> *
>>
>> *
>>
>> Follow Us
>> Linked in photo
>>
>> *
>>
>> Image result for YouTube Icon for Desktop
>>
>> See the source image
>>
>>
>> The information in this e-mail is confidential and solely for the use of the
>> intended recipient(s). If you receive this e-mail in error, please notify
>> the sender and
>> delete the e-mail from your system immediately. In such circumstances, you
>> must not make any use of the e-mail or its contents.
>>
>> Views expressed by an individual in this e-mail do not necessarily reflect
>> the views of Red Oak Consulting.
>>
>> Computer viruses may be transmitted by e-mail. Red Oak Consulting accepts
>> no liability for any damage caused by any virus transmitted by this e-mail.
> Email
>> transmission cannot be guaranteed to be secure or error-free. It is
>> possible that information may be intercepted, corrupted, lost, destroyed,
>> arrive late or
>> incomplete or contain viruses. The sender does not accept liability for any
>> errors or omissions in the contents of this message, which arise as a result
>> of
> e-mail
>> transmission.
>>
>> Red Oak Consulting is registered in England and Wales, Registration No.
>> OC313216 Registered Office Pure Offices, Hatherley Lane, Cheltenham, GL51 6SH
>>
--
Dr. Loris Bennett (Herr/Mr)
ZEDAT, Freie Universität Berlin
