This can be done with the option -sreverse1 or -sreverse2 to use the reverse complement of the firts or second sequence used as input for e.g. dottup. It is a standard option available to all emboss programs. You can get a list of those options with -help -verbose.
David. [EMAIL PROTECTED] schrieb am 25/01/2007 18:31:22: > The program dottup (and other dotplot tools) takes the two sequence given > and displays a dotplot. It would be useful if you could give it the option > to reverse complement one of the sequences then perform a dotplot. > > I was comparing a mRNA with a genomic sequence and wasn't seeing the > similarity between the sequences. Then I releazied I needed to rev-comp the > mRNA and it showed up fine. Of course, one can do this using revseq, but to > have dottup do it for you would be even better. > > Ryan > > > _______________________________________________ > EMBOSS mailing list > [email protected] > http://lists.open-bio.org/mailman/listinfo/emboss _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
