Hi Sudeep, if you add a "@" character in front of a filename, EMBOSS interprets this as a "file of filenames". So you can put all your IDs including the database name into a file (e.g. myseqs.fof). Then you run "seqret @myseqs.fof".
Cheers, David. [EMAIL PROTECTED] schrieb am 06/10/2007 01:38:01: > Hello, > I am wondering if I can use "seqret" from EMBOSS to perform > following action. > > I have a database and I have a file which consists of list of protein > IDs. I want use seqret to search each entry (in the given file) in > the given database and output the search into another file. > for example: > seqret "path to the database":AAT37944.1. > If I use the above mentioned command on command line, I get the > output (protein name, protein sequence etc) in fasta format > consisting the entry. What I want to do is instead of giving one > entry I want to give the whole file, which consists of similar entries. > > Can some one help me here. > Thanks > Sudeep > _______________________________________________ > EMBOSS mailing list > [email protected] > http://lists.open-bio.org/mailman/listinfo/emboss _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
