Sudeep Mehrotra wrote:
> I have a database and I have a file which consists of list of protein
> IDs. I want use seqret to search each entry (in the given file) in
> the given database and output the search into another file.
Dear Sudeep,
If you can, using some script, transform your file into format :
xxx:AC3355
xxx:CG6754
xxx:AV6754
with xxx the name of the databank (you might have to use bare accession
numbers rather than version numbers), then it is easy, just run
seqret list::File
If you want the original entries rather than the entries in fastA
format, use entret instead of seqret.
Guy Bottu,
Belgian EMBnet Node
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