Hi Eric, > I get the following errors after > "successful" installing jemboss: > > Exception in thread "main" java.lang.NoClassDefFoundError: > org.emboss.jemboss.Jemboss > at gnu.gcj.runtime.FirstThread.run() (/usr/lib/libgcj.so.5.0.0) > at _Jv_ThreadRun(java.lang.Thread) (/usr/lib/libgcj.so.5.0.0) > at _Jv_RunMain(java.lang.Class, byte const, int, byte const, boolean) > (/usr/lib/libgcj.so.5.0.0)
I guess you followed the install procedure described on the following page. I ask this because in my initial attempts i thought jemboss would automatically come out of the box when i install emboss. http://emboss.sourceforge.net/Jemboss/install/standalone.html The second thing to check would be whether you change your current working directory to your ${JEMBOSS_INSTALL_DIR}/share/EMBOSS/jemboss directory before running the runJemboss.sh script. If you find it inconvenient to change directory each time before running the script you can set the JEMBOSS_HOME variable at the top of the script to the above directory. Regards, Mahmut _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
