Thanks Mahmut. I also think that jemboss should be automatically compiled with emboss. Maybe someone can provide a more updated installation procedure. Thanks all.
Eric On Tue, Apr 7, 2009 at 1:19 AM, Mahmut Uludag <[email protected]> wrote: > Hi Eric, > > > I get the following errors after > > "successful" installing jemboss: > > > > Exception in thread "main" java.lang.NoClassDefFoundError: > > org.emboss.jemboss.Jemboss > > at gnu.gcj.runtime.FirstThread.run() (/usr/lib/libgcj.so.5.0.0) > > at _Jv_ThreadRun(java.lang.Thread) (/usr/lib/libgcj.so.5.0.0) > > at _Jv_RunMain(java.lang.Class, byte const, int, byte const, boolean) > > (/usr/lib/libgcj.so.5.0.0) > > I guess you followed the install procedure described on the following > page. I ask this because in my initial attempts i thought jemboss would > automatically come out of the box when i install emboss. > > http://emboss.sourceforge.net/Jemboss/install/standalone.html > > The second thing to check would be whether you change your current > working directory to your ${JEMBOSS_INSTALL_DIR}/share/EMBOSS/jemboss > directory before running the runJemboss.sh script. If you find it > inconvenient to change directory each time before running the script you > can set the JEMBOSS_HOME variable at the top of the script to the above > directory. > > Regards, > Mahmut > > > _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
