Hi John, I just shared the file with you through my Google Drive account. Let me know if you have any problems accessing the file.
The command that I have tried to run is: fastquery-0.8.2.8/examples/buildIndex -f sample.2.h5 -n k Thanks, Darryl On Thu, Jul 24, 2014 at 10:59 PM, John Wu <[email protected]> wrote: > Hi, Darryl, > > Are you able to share the test data with us? It would be useful for us to > reproduce the problem. > > If yes, please provide instructions on reproducing the problem. > > Thanks. > > K Wu > On Jul 24, 2014 1:25 AM, "Darryl Reeves" <[email protected]> wrote: > >> Hello, >> >> I am attempting to index a file consisting of unsigned integer data using >> the example program "buildIndex" included with fastquery. This program >> works fine for the test data included with the source code. >> >> However, when I try to index my data, I receive the following memory >> allocation error: >> >> Warning -- fileManager::storage::ctor unable to find 6,572,816,304 bytes >> of space in memory >> terminate called after throwing an instance of 'ibis::bad_alloc' >> what(): storage::ctor(memory) failed >> >> This error is revealed very early in the execution of the program. By >> monitoring the memory being used, I can tell that only 58756 Kb have been >> allocated by the program. The server where this is running has no shortage >> of RAM available. I am willing to share the dataset that I am using but it >> is 3.2 Gb, so it cannot be transferred as part of this message. >> >> Any help that can you can provide to figure out this issue is appreciated. >> >> Thanks, >> >> -- >> Darryl Reeves >> Ph.D. Candidate >> Mason Lab >> Weill Cornell Medical College of Cornell University >> Tri-Institutional Program in Computational Biology and Medicine >> >> _______________________________________________ >> FastBit-users mailing list >> [email protected] >> https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users >> >> > _______________________________________________ > FastBit-users mailing list > [email protected] > https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users > > -- Darryl Reeves Ph.D. Candidate Mason Lab Weill Cornell Medical College of Cornell University Tri-Institutional Program in Computational Biology and Medicine
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