Do a reindex/rebuild of everything. It seems that at least one of the objects are listed in the database, but do not exist in the repository.
Regards On 09/09/2011 12:01 PM, Tobias Schmidt wrote: > Hi, > > after an failed data ingest (PC lost power) I'm getting attached > javax.ws.rs.WebApplicationException if I request anything, e.g. > http://localhost:8080/fedora/objects?pid=true&title=true&terms=* . > > Has anybody an idea to fix that problem? > > Regards, > Tobias > > > javax.ws.rs.WebApplicationException: > org.fcrepo.server.errors.ObjectIntegrityException: FOXML IO stream was > bad : Premature end of file. > at > org.fcrepo.server.rest.BaseRestResource.handleException(BaseRestResource.java:168) > at > org.fcrepo.server.rest.FedoraObjectSearchResource.searchObjects(FedoraObjectSearchResource.java:89) > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > at > sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) > at > sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) > at java.lang.reflect.Method.invoke(Method.java:597) > at > com.sun.jersey.server.impl.model.method.dispatch.AbstractResourceMethodDispatchProvider$ResponseOutInvoker._dispatch(AbstractResourceMethodDispatchProvider.java:175) > at > com.sun.jersey.server.impl.model.method.dispatch.ResourceJavaMethodDispatcher.dispatch(ResourceJavaMethodDispatcher.java:67) > at > com.sun.jersey.server.impl.uri.rules.HttpMethodRule.accept(HttpMethodRule.java:163) > at > com.sun.jersey.server.impl.uri.rules.ResourceClassRule.accept(ResourceClassRule.java:71) > at > com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:111) > at > com.sun.jersey.server.impl.uri.rules.RootResourceClassesRule.accept(RootResourceClassesRule.java:63) > at > com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:689) > at > com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:647) > at > com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:638) > at > com.sun.jersey.spi.container.servlet.WebComponent.service(WebComponent.java:309) > at > com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:425) > at > com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:590) > at javax.servlet.http.HttpServlet.service(HttpServlet.java:717) > at > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290) > at > org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) > at > org.fcrepo.server.security.servletfilters.FilterRestApiFlash.doFilter(FilterRestApiFlash.java:79) > at > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) > at > org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) > at > org.fcrepo.server.security.jaas.AuthFilterJAAS.doFilter(AuthFilterJAAS.java:270) > at > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) > at > org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) > at > org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233) > at > org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191) > at > org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:563) > at > org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127) > at > org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) > at > org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) > at > org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298) > at > org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:857) > at > org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:588) > at > org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:489) > at java.lang.Thread.run(Thread.java:662) > Caused by: org.fcrepo.server.errors.ObjectIntegrityException: FOXML IO > stream was bad : Premature end of file. > at > org.fcrepo.server.storage.translation.FOXMLDODeserializer.deserialize(FOXMLDODeserializer.java:258) > at > org.fcrepo.server.storage.translation.DOTranslatorImpl.deserialize(DOTranslatorImpl.java:75) > at > org.fcrepo.server.storage.translation.DOTranslatorModule.deserialize(DOTranslatorModule.java:126) > at > org.fcrepo.server.storage.SimpleDOReader.<init>(SimpleDOReader.java:93) > at > org.fcrepo.server.storage.DefaultDOManager.getReader(DefaultDOManager.java:646) > at > org.fcrepo.server.search.FieldSearchResultSQLImpl.getObjectFields(FieldSearchResultSQLImpl.java:489) > at > org.fcrepo.server.search.FieldSearchResultSQLImpl.step(FieldSearchResultSQLImpl.java:401) > at > org.fcrepo.server.search.FieldSearchSQLImpl.stepAndRemember(FieldSearchSQLImpl.java:352) > at > org.fcrepo.server.search.FieldSearchSQLImpl.findObjects(FieldSearchSQLImpl.java:321) > at > org.fcrepo.server.search.FieldSearchSQLModule.findObjects(FieldSearchSQLModule.java:161) > at > org.fcrepo.server.storage.DefaultDOManager.findObjects(DefaultDOManager.java:1793) > at > org.fcrepo.server.access.DefaultAccess.findObjects(DefaultAccess.java:708) > at > org.fcrepo.server.rest.FedoraObjectSearchResource.searchObjects(FedoraObjectSearchResource.java:72) > ... 36 more > Caused by: org.xml.sax.SAXParseException: Premature end of file. > at > org.apache.xerces.util.ErrorHandlerWrapper.createSAXParseException(Unknown > Source) > at org.apache.xerces.util.ErrorHandlerWrapper.fatalError(Unknown Source) > at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source) > at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source) > at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source) > at > org.apache.xerces.impl.XMLVersionDetector.determineDocVersion(Unknown > Source) > at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) > at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) > at org.apache.xerces.parsers.XMLParser.parse(Unknown Source) > at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source) > at org.apache.xerces.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown > Source) > at org.apache.xerces.jaxp.SAXParserImpl.parse(Unknown Source) > at javax.xml.parsers.SAXParser.parse(SAXParser.java:198) > at > org.fcrepo.server.storage.translation.FOXMLDODeserializer.deserialize(FOXMLDODeserializer.java:253) > ... 48 more > ------------------------------------------------------------------------------ Why Cloud-Based Security and Archiving Make Sense Osterman Research conducted this study 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Learn more. http://www.accelacomm.com/jaw/sfnl/114/51425301/ _______________________________________________ Fedora-commons-users mailing list Fedora-commons-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fedora-commons-users
