[fcrepo-user] Getting javax.ws.rs.WebApplicationException

Fri, 09 Sep 2011 03:04:28 -0700 

Hi,
after an failed data ingest (PC lost power) I'm getting attached javax.ws.rs.WebApplicationException if I request anything, e.g. http://localhost:8080/fedora/objects?pid=true&title=true&terms=* . 

Has anybody an idea to fix that problem?

Regards,
Tobias



javax.ws.rs.WebApplicationException: 
org.fcrepo.server.errors.ObjectIntegrityException: FOXML IO stream was 
bad : Premature end of file.
	at 
org.fcrepo.server.rest.BaseRestResource.handleException(BaseRestResource.java:168)
	at 
org.fcrepo.server.rest.FedoraObjectSearchResource.searchObjects(FedoraObjectSearchResource.java:89)

        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

	at 
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at 
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)

        at java.lang.reflect.Method.invoke(Method.java:597)

	at 
com.sun.jersey.server.impl.model.method.dispatch.AbstractResourceMethodDispatchProvider$ResponseOutInvoker._dispatch(AbstractResourceMethodDispatchProvider.java:175)
	at 
com.sun.jersey.server.impl.model.method.dispatch.ResourceJavaMethodDispatcher.dispatch(ResourceJavaMethodDispatcher.java:67)
	at 
com.sun.jersey.server.impl.uri.rules.HttpMethodRule.accept(HttpMethodRule.java:163)
	at 
com.sun.jersey.server.impl.uri.rules.ResourceClassRule.accept(ResourceClassRule.java:71)
	at 
com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:111)
	at 
com.sun.jersey.server.impl.uri.rules.RootResourceClassesRule.accept(RootResourceClassesRule.java:63)
	at 
com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:689)
	at 
com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:647)
	at 
com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:638)
	at 
com.sun.jersey.spi.container.servlet.WebComponent.service(WebComponent.java:309)
	at 
com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:425)
	at 
com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:590)

        at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)

	at 
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290)
	at 
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at 
org.fcrepo.server.security.servletfilters.FilterRestApiFlash.doFilter(FilterRestApiFlash.java:79)
	at 
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at 
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at 
org.fcrepo.server.security.jaas.AuthFilterJAAS.doFilter(AuthFilterJAAS.java:270)
	at 
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at 
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at 
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233)
	at 
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)
	at 
org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:563)
	at 
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127)
	at 
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
	at 
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
	at 
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298)
	at 
org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:857)
	at 
org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:588)

        at 
org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:489)
        at java.lang.Thread.run(Thread.java:662)

Caused by: org.fcrepo.server.errors.ObjectIntegrityException: FOXML IO 
stream was bad : Premature end of file.
	at 
org.fcrepo.server.storage.translation.FOXMLDODeserializer.deserialize(FOXMLDODeserializer.java:258)
	at 
org.fcrepo.server.storage.translation.DOTranslatorImpl.deserialize(DOTranslatorImpl.java:75)
	at 
org.fcrepo.server.storage.translation.DOTranslatorModule.deserialize(DOTranslatorModule.java:126)

        at 
org.fcrepo.server.storage.SimpleDOReader.<init>(SimpleDOReader.java:93)

	at 
org.fcrepo.server.storage.DefaultDOManager.getReader(DefaultDOManager.java:646)
	at 
org.fcrepo.server.search.FieldSearchResultSQLImpl.getObjectFields(FieldSearchResultSQLImpl.java:489)
	at 
org.fcrepo.server.search.FieldSearchResultSQLImpl.step(FieldSearchResultSQLImpl.java:401)
	at 
org.fcrepo.server.search.FieldSearchSQLImpl.stepAndRemember(FieldSearchSQLImpl.java:352)
	at 
org.fcrepo.server.search.FieldSearchSQLImpl.findObjects(FieldSearchSQLImpl.java:321)
	at 
org.fcrepo.server.search.FieldSearchSQLModule.findObjects(FieldSearchSQLModule.java:161)
	at 
org.fcrepo.server.storage.DefaultDOManager.findObjects(DefaultDOManager.java:1793)
	at 
org.fcrepo.server.access.DefaultAccess.findObjects(DefaultAccess.java:708)
	at 
org.fcrepo.server.rest.FedoraObjectSearchResource.searchObjects(FedoraObjectSearchResource.java:72)

        ... 36 more
Caused by: org.xml.sax.SAXParseException: Premature end of file.

	at 
org.apache.xerces.util.ErrorHandlerWrapper.createSAXParseException(Unknown 
Source)

        at org.apache.xerces.util.ErrorHandlerWrapper.fatalError(Unknown Source)
        at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source)
        at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source)
        at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source)

	at 
org.apache.xerces.impl.XMLVersionDetector.determineDocVersion(Unknown 
Source)

        at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
        at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
        at org.apache.xerces.parsers.XMLParser.parse(Unknown Source)
        at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source)
        at org.apache.xerces.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown 
Source)
        at org.apache.xerces.jaxp.SAXParserImpl.parse(Unknown Source)
        at javax.xml.parsers.SAXParser.parse(SAXParser.java:198)

	at 
org.fcrepo.server.storage.translation.FOXMLDODeserializer.deserialize(FOXMLDODeserializer.java:253)

        ... 48 more




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