Thanks for soon reply.Your suggestion to run the rebuild script did work after deleting the incompletely uploaded FOXML object file. Without removing that file the script reports an org.fcrepo.server.errors.ObjectIntegrityException with message "FOXML IO stream was bad : Premature end of file".
Regards Tobias On 09.09.2011 12:38, Asger Askov Blekinge wrote:
Do a reindex/rebuild of everything. It seems that at least one of the objects are listed in the database, but do not exist in the repository. Regards On 09/09/2011 12:01 PM, Tobias Schmidt wrote:Hi, after an failed data ingest (PC lost power) I'm getting attached javax.ws.rs.WebApplicationException if I request anything, e.g. http://localhost:8080/fedora/objects?pid=true&title=true&terms=* . Has anybody an idea to fix that problem? Regards, Tobias javax.ws.rs.WebApplicationException: org.fcrepo.server.errors.ObjectIntegrityException: FOXML IO stream was bad : Premature end of file. at org.fcrepo.server.rest.BaseRestResource.handleException(BaseRestResource.java:168) at org.fcrepo.server.rest.FedoraObjectSearchResource.searchObjects(FedoraObjectSearchResource.java:89) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at com.sun.jersey.server.impl.model.method.dispatch.AbstractResourceMethodDispatchProvider$ResponseOutInvoker._dispatch(AbstractResourceMethodDispatchProvider.java:175) at com.sun.jersey.server.impl.model.method.dispatch.ResourceJavaMethodDispatcher.dispatch(ResourceJavaMethodDispatcher.java:67) at com.sun.jersey.server.impl.uri.rules.HttpMethodRule.accept(HttpMethodRule.java:163) at com.sun.jersey.server.impl.uri.rules.ResourceClassRule.accept(ResourceClassRule.java:71) at com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:111) at com.sun.jersey.server.impl.uri.rules.RootResourceClassesRule.accept(RootResourceClassesRule.java:63) at com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:689) at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:647) at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:638) at com.sun.jersey.spi.container.servlet.WebComponent.service(WebComponent.java:309) at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:425) at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:590) at javax.servlet.http.HttpServlet.service(HttpServlet.java:717) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) at org.fcrepo.server.security.servletfilters.FilterRestApiFlash.doFilter(FilterRestApiFlash.java:79) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) at org.fcrepo.server.security.jaas.AuthFilterJAAS.doFilter(AuthFilterJAAS.java:270) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191) at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:563) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127) at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298) at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:857) at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:588) at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:489) at java.lang.Thread.run(Thread.java:662) Caused by: org.fcrepo.server.errors.ObjectIntegrityException: FOXML IO stream was bad : Premature end of file. at org.fcrepo.server.storage.translation.FOXMLDODeserializer.deserialize(FOXMLDODeserializer.java:258) at org.fcrepo.server.storage.translation.DOTranslatorImpl.deserialize(DOTranslatorImpl.java:75) at org.fcrepo.server.storage.translation.DOTranslatorModule.deserialize(DOTranslatorModule.java:126) at org.fcrepo.server.storage.SimpleDOReader.<init>(SimpleDOReader.java:93) at org.fcrepo.server.storage.DefaultDOManager.getReader(DefaultDOManager.java:646) at org.fcrepo.server.search.FieldSearchResultSQLImpl.getObjectFields(FieldSearchResultSQLImpl.java:489) at org.fcrepo.server.search.FieldSearchResultSQLImpl.step(FieldSearchResultSQLImpl.java:401) at org.fcrepo.server.search.FieldSearchSQLImpl.stepAndRemember(FieldSearchSQLImpl.java:352) at org.fcrepo.server.search.FieldSearchSQLImpl.findObjects(FieldSearchSQLImpl.java:321) at org.fcrepo.server.search.FieldSearchSQLModule.findObjects(FieldSearchSQLModule.java:161) at org.fcrepo.server.storage.DefaultDOManager.findObjects(DefaultDOManager.java:1793) at org.fcrepo.server.access.DefaultAccess.findObjects(DefaultAccess.java:708) at org.fcrepo.server.rest.FedoraObjectSearchResource.searchObjects(FedoraObjectSearchResource.java:72) ... 36 more Caused by: org.xml.sax.SAXParseException: Premature end of file. at org.apache.xerces.util.ErrorHandlerWrapper.createSAXParseException(Unknown Source) at org.apache.xerces.util.ErrorHandlerWrapper.fatalError(Unknown Source) at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source) at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source) at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source) at org.apache.xerces.impl.XMLVersionDetector.determineDocVersion(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XMLParser.parse(Unknown Source) at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source) at org.apache.xerces.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at org.apache.xerces.jaxp.SAXParserImpl.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(SAXParser.java:198) at org.fcrepo.server.storage.translation.FOXMLDODeserializer.deserialize(FOXMLDODeserializer.java:253) ... 48 more------------------------------------------------------------------------------ Why Cloud-Based Security and Archiving Make Sense Osterman Research conducted this study that outlines how and why cloud computing security and archiving is rapidly being adopted across the IT space for its ease of implementation, lower cost, and increased reliability. Learn more. http://www.accelacomm.com/jaw/sfnl/114/51425301/ _______________________________________________ Fedora-commons-users mailing list Fedora-commons-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fedora-commons-users
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------------------------------------------------------------------------------ Why Cloud-Based Security and Archiving Make Sense Osterman Research conducted this study that outlines how and why cloud computing security and archiving is rapidly being adopted across the IT space for its ease of implementation, lower cost, and increased reliability. Learn more. http://www.accelacomm.com/jaw/sfnl/114/51425301/
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