Dear all,
I am trying to install fenics using dorsal on ubuntu 13.10.
Unfortunately I am having a problem with the installation of petsc,
umfpack to be precise.
The installation stops and issues the following error
===============================================================================
Compiling UMFPACK; this may take several minutes
===============================================================================
TESTING: check from
config.libraries(/home/jack/BTSync/UNI/fenics/FEniCS/src/petsc-3.4.2/config/BuildSystem/config/libraries.py:145)
TESTING: checkInclude from
config.headers(/home/jack/BTSync/UNI/fenics/FEniCS/src/petsc-3.4.2/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from
config.packages.UMFPACK(/home/jack/BTSync/UNI/fenics/FEniCS/src/petsc-3.4.2/config/BuildSystem/config/package.py:518)
TESTING: alternateConfigureLibrary from
config.packages.CHOLMOD(/home/jack/BTSync/UNI/fenics/FEniCS/src/petsc-3.4.2/config/BuildSystem/config/package.py:522)
TESTING: alternateConfigureLibrary from
PETSc.packages.oski(/home/jack/BTSync/UNI/fenics/FEniCS/src/petsc-3.4.2/config/BuildSystem/config/package.py:522)
TESTING: alternateConfigureLibrary from
PETSc.packages.SuperLU(/home/jack/BTSync/UNI/fenics/FEniCS/src/petsc-3.4.2/config/BuildSystem/config/package.py:522)
TESTING: alternateConfigureLibrary from
PETSc.packages.sundials(/home/jack/BTSync/UNI/fenics/FEniCS/src/petsc-3.4.2/config/BuildSystem/config/package.py:522)
TESTING: alternateConfigureLibrary from
PETSc.packages.elemental(/home/jack/BTSync/UNI/fenics/FEniCS/src/petsc-3.4.2/config/BuildSystem/config/package.py:522)
TESTING: alternateConfigureLibrary from
PETSc.packages.clique(/home/jack/BTSync/UNI/fenics/FEniCS/src/petsc-3.4.2/config/BuildSystem/config/package.py:522)
TESTING: configureLibrary from
PETSc.packages.ml(/home/jack/BTSync/UNI/fenics/FEniCS/src/petsc-3.4.2/config/BuildSystem/config/package.py:464)
TESTING: check from
config.libraries(/home/jack/BTSync/UNI/fenics/FEniCS/src/petsc-3.4.2/config/BuildSystem/config/libraries.py:145)
*******************************************************************************
UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log
for details):
-------------------------------------------------------------------------------
--with-ml-lib=['/home/jack/BTSync/UNI/fenics/FEniCS/lib/libml.so'] and
--with-ml-include=['/home/jack/BTSync/UNI/fenics/FEniCS/include/trilinos']
did not work
*******************************************************************************
Failure with exit status: 1
Exit message: There was a problem building petsc-3.4.2.
The configure.log file is not of much help to me, but here it is:
#if defined(__cplusplus)
extern "C" {
}
#else
#endif
#endif
*******************************************************************************
UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log
for details):
-------------------------------------------------------------------------------
--with-ml-lib=['/home/jack/BTSync/UNI/fenics/FEniCS/lib/libml.so'] and
--with-ml-include=['/home/jack/BTSync/UNI/fenics/FEniCS/include/trilinos']
did not work
*******************************************************************************
File "./config/configure.py", line 293, in petsc_configure
framework.configure(out = sys.stdout)
File
"/home/jack/BTSync/UNI/fenics/FEniCS/src/petsc-3.4.2/config/BuildSystem/config/framework.py",
line 933, in configure
child.configure()
File
"/home/jack/BTSync/UNI/fenics/FEniCS/src/petsc-3.4.2/config/BuildSystem/config/package.py",
line 556, in configure
self.executeTest(self.configureLibrary)
File
"/home/jack/BTSync/UNI/fenics/FEniCS/src/petsc-3.4.2/config/BuildSystem/config/base.py",
line 115, in executeTest
ret = apply(test, args,kargs)
File
"/home/jack/BTSync/UNI/fenics/FEniCS/src/petsc-3.4.2/config/BuildSystem/config/package.py",
line 484, in configureLibrary
for location, directory, lib, incl in self.generateGuesses():
File
"/home/jack/BTSync/UNI/fenics/FEniCS/src/petsc-3.4.2/config/BuildSystem/config/package.py",
line 294, in generateGuesses
'--with-'+self.package+'-include='+str(self.framework.argDB['with-'+self.package+'-include'])+'
did not work')
The libml.so library and the include/trilins folder are where they
should be.
Can anyone help me, please?
Best regards,
Jacopo
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