On Tue, Oct 7, 2014 at 11:11 PM, Crooks, Cynthia J <[email protected]> wrote: > Johannes, > > I have started the build over again using gcc-4.8.2. As luck would have it, > the seemed to break the build for hd5f. It cannot link a "simple MPI-IO" > application. I have attached the dorsal_configure.log.
It looks like you attached the wrong dorsal_configure.log file. This contains the failed DOLFIN build with gcc 4.3. > > I believe the problem is the linker flags needed for the openmpi (1.8.1) that > I am using. The conftest is using "-lpthread -lz -lrt -lm". When I use > "-pthread -Wl,-rpath -Wl,/hpc/apps/SLES > /3.0/x86_64/openmpi/1.8.1-gcc482/lib -Wl,--enable-new-dtags > -L/hpc/apps/SLES/3.0/x86_64/openmpi/1.8 > .1-gcc482/lib -lmpi" I get an object file. I am not sure where to change > the flags for the configuration. > > I have attached test.sh, testcjc.sh and testcjc.c. Testcjc.c is the isolated > program that fails during the configure step. Test.sh is the gcc command > used by configure. Testcjc.sh is the gcc command with the additional flags. You can try the latest version of hdf5 (1.8.13). Simply update the version number in hdf5.package in Dorsal. Johannes _______________________________________________ fenics-support mailing list [email protected] http://fenicsproject.org/mailman/listinfo/fenics-support
