[Please keep fenics-support in Cc]
On Wed, Oct 8, 2014 at 3:54 PM, Crooks, Cynthia J <[email protected]> wrote:
> Johannes,
>
> I apologize. I did attach the wrong file. Here is the correct one.
Thanks. Try using the mpi compiler wrapper when building hdf5, for
instance by adding the following in hdf5.package:
package_specific_setup () {
export CC=mpicc
}
> I will probably not have a chance to try the more recent hd5f until this
> afternoon.
ok.
Johannes
> Cindy
>
> -----Original Message-----
> From: [email protected] [mailto:[email protected]] On Behalf Of
> Johannes Ring
> Sent: Wednesday, October 08, 2014 8:24 AM
> To: Crooks, Cynthia J
> Cc: [email protected]
> Subject: Re: [FEniCS-support] FEniCS build for SLES 11 SP 3 using OpenSuse
> 12.1 as a template
>
> On Tue, Oct 7, 2014 at 11:11 PM, Crooks, Cynthia J <[email protected]>
> wrote:
>> Johannes,
>>
>> I have started the build over again using gcc-4.8.2. As luck would have
>> it, the seemed to break the build for hd5f. It cannot link a "simple
>> MPI-IO" application. I have attached the dorsal_configure.log.
>
> It looks like you attached the wrong dorsal_configure.log file. This contains
> the failed DOLFIN build with gcc 4.3.
>
>>
>> I believe the problem is the linker flags needed for the openmpi
>> (1.8.1) that I am using. The conftest is using "-lpthread -lz -lrt
>> -lm". When I use "-pthread -Wl,-rpath -Wl,/hpc/apps/SLES
>> /3.0/x86_64/openmpi/1.8.1-gcc482/lib -Wl,--enable-new-dtags
>> -L/hpc/apps/SLES/3.0/x86_64/openmpi/1.8
>> .1-gcc482/lib -lmpi" I get an object file. I am not sure where to change
>> the flags for the configuration.
>>
>> I have attached test.sh, testcjc.sh and testcjc.c. Testcjc.c is the
>> isolated program that fails during the configure step. Test.sh is the gcc
>> command used by configure. Testcjc.sh is the gcc command with the
>> additional flags.
>
> You can try the latest version of hdf5 (1.8.13). Simply update the version
> number in hdf5.package in Dorsal.
>
> Johannes
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