Here are the last lines of /home/user1/.hashdist/tmp/dolfin-sd2jntuwgyab/build.log:
......... 2015/02/02 12:05:47 - INFO: [package:run_job] u'ZLIB_ID': u'zlib/3el5ccejre7bcjqgld5gp6iym4ccd5oe'} 2015/02/02 12:05:49 - INFO: [package:run_job] -- The C compiler identification is GNU 4.4.6 2015/02/02 12:05:49 - INFO: [package:run_job] -- The CXX compiler identification is GNU 4.4.6 2015/02/02 12:05:49 - INFO: [package:run_job] -- Check for working C compiler: /usr/bin/cc 2015/02/02 12:05:49 - INFO: [package:run_job] -- Check for working C compiler: /usr/bin/cc -- works 2015/02/02 12:05:49 - INFO: [package:run_job] -- Detecting C compiler ABI info 2015/02/02 12:05:50 - INFO: [package:run_job] -- Detecting C compiler ABI info - done 2015/02/02 12:05:50 - INFO: [package:run_job] -- Check for working CXX compiler: /usr/bin/c++ 2015/02/02 12:05:50 - INFO: [package:run_job] -- Check for working CXX compiler: /usr/bin/c++ -- works 2015/02/02 12:05:50 - INFO: [package:run_job] -- Detecting CXX compiler ABI info 2015/02/02 12:05:50 - INFO: [package:run_job] -- Detecting CXX compiler ABI info - done 2015/02/02 12:05:50 - INFO: [package:run_job] CMake Error at CMakeLists.txt:25 (message): 2015/02/02 12:05:50 - INFO: [package:run_job] GCC version must be at least 4.6 (for sufficient C++11 support. You have 2015/02/02 12:05:50 - INFO: [package:run_job] version 4.4.6 2015/02/02 12:05:50 - INFO: [package:run_job] 2015/02/02 12:05:50 - INFO: [package:run_job] 2015/02/02 12:05:50 - INFO: [package:run_job] -- Configuring incomplete, errors occurred! 2015/02/02 12:05:50 - INFO: [package:run_job] See also "/home/user1/.hashdist/tmp/dolfin-sd2jntuwgyab/_build/CMakeFiles/CMakeOutput.log". 2015/02/02 12:05:50 - ERROR: [package:run_job] Command '[u'/bin/bash', '_hashdist/build.sh']' returned non-zero exit status 1 2015/02/02 12:05:50 - ERROR: [package:run_job] command failed (code=1); raising It seems that the problem comes from the GCC version. On this cluster, several versions of gcc are available (gcc-4.7.2, gcc-4.8.2 and gcc-4.9.1) but when I try to load them and rerun the fenics installation, I still get the same error... What would be the way to specify which GCC version to use? Thank you for your help! On Mon, Feb 2, 2015 at 2:39 PM, Johannes Ring <[email protected]> wrote: > > On Feb 2, 2015 9:31 PM, "Jan Blechta" <[email protected]> wrote: > > > > On Mon, 2 Feb 2015 12:29:44 -0600 > > "Laboure, Vincent M" <[email protected]> wrote: > > > > > By changing the python version I am using, the download indeed starts! > > > Thanks Jan! > > > > > > After downloading a bunch of stuff (lapack, petsc, etc.), it fails to > > > download dolfin and returns the following error: > > > > > > Downloading > > > > https://bitbucket.org/fenics-project/dolfin/downloads/dolfin-1.5.0.tar.gz. > .. > > > [=========================] 100.0% (9.2MB of 9.2MB) 8.488MB/s ETA 0s > > > [dolfin] Building dolfin/sd2jntuwgyab, follow log with: > > > [dolfin] tail > > > -f /home/user1/.hashdist/tmp/dolfin-sd2jntuwgyab/build.log > > > [dolfin|ERROR] Command '[u'/bin/bash', '_hashdist/build.sh']' > > > returned non-zero exit status 1 [dolfin|ERROR] command failed > > > (code=1); raising > > > > > > Any idea what this could be due to? I have looked into > > > /home/user1/.hashdist/tmp/dolfin-sd2jntuwgyab/_hashdist/build.sh but I > > > couldn't figure out what caused this error... > > > > Post this file, please. > > I think the interesting file is the build.log: > > /home/user1/.hashdist/tmp/dolfin-sd2jntuwgyab/build.log. > > Johannes > > > Jan > > > > > > > > Thanks a lot! > > > > > > > > > On Sat, Jan 31, 2015 at 6:58 AM, Jan Blechta > > > <[email protected]> wrote: > > > > > > > This seems like this issue > > > > https://github.com/hashdist/hashdist/issues/83 > > > > > > > > Jan > > > > > > > > > > > > On Tue, 27 Jan 2015 17:31:46 -0600 > > > > "Laboure, Vincent M" <[email protected]> wrote: > > > > > > > > > Hello, > > > > > > > > > > Now that I have FEniCS 1.5 working on my local machine, I am > > > > > eager to install it on a cluster to run bigger problems. > > > > > > > > > > Since I don't have the administrative privileges, I have been > > > > > trying to use fenics-install.sh typing: > > > > > > > > > > curl -s http://fenicsproject.org/fenics-install.sh | bash > > > > > > > > > > I tried on two different clusters (Red Hat Enterprise Linux Server > > > > > release 6.3 for the first one and 6.5 for the second one) from two > > > > > completely different institutions. Both returns the same error: > > > > > > > > > > > > > > > > > > > > --2015-01-27 17:07:50-- > > > > > http://fenicsproject.org/fenics-install.sh Resolving > > > > > fenicsproject.org... 82.118.24.73 Connecting to > > > > > fenicsproject.org|82.118.24.73|:80... connected. HTTP request > > > > > sent, awaiting response... 200 OK Length: 6275 (6.1K) [text/x-sh] > > > > > Saving to: “STDOUT” > > > > > > > > > > 100%[======================================>] 6,275 > > > > > --.-K/s in 0s > > > > > > > > > > Created temporary directory /tmp/fenics-install.dlAW9R for FEniCS > > > > > installation. > > > > > > > > > > Downloading HashDist... > > > > > 2015-01-27 17:07:50 (30.9 MB/s) - written to stdout [6275/6275] > > > > > > > > > > Initialized empty Git repository in > > > > > /tmp/fenics-install.dlAW9R/hashdist/.git/ > > > > > remote: Counting objects: 4775, done. > > > > > remote: Total 4775 (delta 0), reused 0 (delta 0) > > > > > Receiving objects: 100% (4775/4775), 2.13 MiB | 1.10 MiB/s, done. > > > > > Resolving deltas: 100% (2889/2889), done. > > > > > > > > > > Downloading HashStack... > > > > > Initialized empty Git repository in > > > > > /tmp/fenics-install.dlAW9R/hashstack/.git/ > > > > > remote: Counting objects: 5852, done. > > > > > remote: Compressing objects: 100% (8/8), done. > > > > > remote: Total 5852 (delta 2), reused 0 (delta 0) > > > > > Receiving objects: 100% (5852/5852), 1.12 MiB | 963 KiB/s, done. > > > > > Resolving deltas: 100% (3460/3460), done. > > > > > > > > > > Downloading FEniCS Install... > > > > > Initialized empty Git repository in > > > > > /tmp/fenics-install.dlAW9R/fenics-developer-tools/.git/ > > > > > remote: Counting objects: 138, done. > > > > > remote: Compressing objects: 100% (133/133), done. > > > > > remote: Total 138 (delta 72), reused 0 (delta 0) > > > > > Receiving objects: 100% (138/138), 92.18 KiB, done. > > > > > Resolving deltas: 100% (72/72), done. > > > > > > > > > > patching file pkgs/petsc/petsc.py > > > > > patching file pkgs/petsc/petsc.yaml > > > > > Ready to build FEniCS. This may take about 2 hours. > > > > > > > > > > The following build types are supported: > > > > > > > > > > [0] development version of FEniCS [default] > > > > > [1] latest stable version of FEniCS, currently 1.5 > > > > > [2] only dependencies, including e.g. MPI, PETSc, Swig, Boost > > > > > > > > > > Please select build type [0, 1, 2]: 1 > > > > > Using HashStack profile fenics.Linux.yaml. > > > > > > > > > > Stable build requested. > > > > > > > > > > Starting build... > > > > > > > > > > Directory ba created. > > > > > Directory bld created. > > > > > Directory src created. > > > > > Directory db created. > > > > > Directory cache created. > > > > > Directory gcroots created. > > > > > Default configuration file /home/user1/.hashdist/config.yaml > > > > > written. Downloading > > > > > > http://releases.nixos.org/patchelf/patchelf-0.8/patchelf-0.8.tar.bz2... > > > > > [=========================] 100.0% (0.1MB of 0.1MB) 0.223MB/s ETA > > > > > 0s [patchelf] Building patchelf/k3rloj265ogt, follow log with: > > > > > [patchelf] tail -f > > > > > /home/user1/.hashdist/tmp/patchelf-k3rloj265ogt/build.log > > > > > Downloading > > > > > > https://sourceforge.net/projects/pcre/files/pcre/8.34/pcre-8.34.tar.bz2. > > > > .. > > > > > [ERROR] urllib failed to download (reason: unknown url type: > > > > > https): > > > > > > https://sourceforge.net/projects/pcre/files/pcre/8.34/pcre-8.34.tar.bz2 > > > > > Downloading > > > > > > https://sourceforge.net/projects/pcre/files/pcre/8.34/pcre-8.34.tar.bz2. > > > > .. > > > > > [ERROR] urllib failed to download (reason: unknown url type: > > > > > https): > > > > > > https://sourceforge.net/projects/pcre/files/pcre/8.34/pcre-8.34.tar.bz2 > > > > > Downloading > > > > > > https://sourceforge.net/projects/pcre/files/pcre/8.34/pcre-8.34.tar.bz2. > > > > .. > > > > > [ERROR] urllib failed to download (reason: unknown url type: > > > > > https): > > > > > > https://sourceforge.net/projects/pcre/files/pcre/8.34/pcre-8.34.tar.bz2 > > > > > [CRITICAL] You may wish to check your Internet connection or the > > > > > remote server > > > > > > > > > > > > > > > Does anybody know what the problem could be? > > > > > > > > > > Many thanks! > > > > > > > > > > > > _______________________________________________ > > fenics-support mailing list > > [email protected] > > http://fenicsproject.org/mailman/listinfo/fenics-support > >
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