Unfortunately, no success. When I set RHOME to be /sw/Library/Frameworks/R.framework/Versions/Current I get this error message:
Traceback (most recent call last): File "./rF_expression.py", line 5, in <module> from rpy import r File "/sw/lib/python2.7/site-packages/rpy.py", line 58, in <module> RVERSION = rpy_tools.get_R_VERSION(RHOME) File "/sw/lib/python2.7/site-packages/rpy_tools.py", line 99, in get_R_VERSION " `%s'.\n" % rexec ) RuntimeError: Couldn't execute the R interpreter `/sw/Library/Frameworks/R.framework/Versions/Current/bin/R'. In particular, get_R_VERSION in rpy_tools.py looks for the R interpreter in the directory $RHOME/bin/ which of course does not exist; R is in $RHOME. Thanks, Herb Wright Contractor Desktop Group NCBI/NLM/NIH wrigh...@ncbi.nlm.nih.gov -----Original Message----- From: Alexander Hansen <alexanderk.han...@gmail.com> Reply-To: "fink-beginners@lists.sourceforge.net" <fink-beginners@lists.sourceforge.net> Date: Wed, 21 Sep 2011 20:06:31 -0400 To: Herb Wright <wrigh...@ncbi.nlm.nih.gov> Cc: "moni...@users.sourceforge.net" <moni...@users.sourceforge.net>, "fink-beginners@lists.sourceforge.net" <fink-beginners@lists.sourceforge.net> Subject: Re: [Fink-beginners] Problem with rpy-py27 >-----BEGIN PGP SIGNED MESSAGE----- >Hash: SHA1 > >On 9/21/11 5:59 PM, Wright, Herbert (NIH/NLM/NCBI) [C] wrote: >> Im having an issue with rpy-py27 under Fink >> >> Im using /sw/bin/python2.7 and it says: >> >> >>>>> import rpy >> Traceback (most recent call last): File "<stdin>", line 1, in >> <module> File "/sw/lib/python2.7/site-packages/rpy.py", line 134, >> in <module> """ % RVERSION) RuntimeError: No module named _rpy2131 >> >> RPy module can not be imported. Please check if your rpy >> installation supports R 2.13.1. If you have multiple R versions >> installed, you may need to set RHOME before importing rpy. For >> example: >> >>>>> from rpy_options import set_options >>>>> set_options(RHOME='c:/progra~1/r/rw2011/') > >Ewww, Windows. > > >>>>> from rpy import * >> >> >> Below is the version info... >> >> rpy-py27 Python module to access R functions >> >> Installed: 1.0.3-2 Unstable: 1.0.3-2 Stable: None Binary: >> 1.0.3-2 >> >> >> RPy is a very simple, yet robust, interface to the R Programming >> Language. It can manage all kinds of R objects and can execute >> arbitrary R functions (including the graphic functions). All the >> errors from the R language are converted to Python exceptions. >> >> Doesn't work with quartz graphics device (need a Framework build >> of python for that). >> >> Web site: http://rpy.sourceforge.net/ >> >> Maintainer: Monic Polynomial <moni...@users.sourceforge.net> >> >> >> Thanks, Herb Wright Contractor Desktop Group NCBI/NLM/NIH >> wrigh...@ncbi.nlm.nih.gov >> >> >> >> >> >>> >> >> > >Did you have rpy-py27 installed before updating r-base? If so, try >"fink rebuild rpy-p27" > >And does setting RHOME work? I'm guessing that'd be to >/sw/Library/Frameworks/R.framework/ or to one of its subdirectories. > >Our R package has been recently refactored, and it may be the case >that we need to update rpy accordingly. >- -- >Alexander Hansen, Ph.D. >Fink User Liaison >http://finkakh.wordpress.com/ >-----BEGIN PGP SIGNATURE----- >Version: GnuPG v1.4.11 (Darwin) >Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ > >iEYEARECAAYFAk56fAYACgkQB8UpO3rKjQ/7nwCfX2EEjXD/97Y+1lyE8C3gPwtn >jWwAn1PBeewnZZfQQno8NgO6XOzVVYu9 >=XX5e >-----END PGP SIGNATURE----- ------------------------------------------------------------------------------ All the data continuously generated in your IT infrastructure contains a definitive record of customers, application performance, security threats, fraudulent activity and more. Splunk takes this data and makes sense of it. Business sense. IT sense. Common sense. http://p.sf.net/sfu/splunk-d2dcopy1 _______________________________________________ Fink-beginners mailing list Fink-beginners@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.apple.fink.beginners Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-beginners
