-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 On 9/22/11 11:15 AM, Wright, Herbert (NIH/NLM/NCBI) [C] wrote: > Unfortunately, no success. When I set RHOME to be > /sw/Library/Frameworks/R.framework/Versions/Current I get this > error message: > > Traceback (most recent call last): File "./rF_expression.py", line > 5, in <module> from rpy import r File > "/sw/lib/python2.7/site-packages/rpy.py", line 58, in <module> > RVERSION = rpy_tools.get_R_VERSION(RHOME) File > "/sw/lib/python2.7/site-packages/rpy_tools.py", line 99, in > get_R_VERSION " `%s'.\n" % rexec ) RuntimeError: Couldn't execute > the R interpreter > `/sw/Library/Frameworks/R.framework/Versions/Current/bin/R'. > > > In particular, get_R_VERSION in rpy_tools.py looks for the R > interpreter in the directory $RHOME/bin/ which of course does not > exist; R is in $RHOME. > > > > Thanks, Herb Wright Contractor Desktop Group NCBI/NLM/NIH > > wrigh...@ncbi.nlm.nih.gov > > >
Make sure r-base213 and r-base213-dev are installed, and do a "fink rebuild rpy-py27". That gave an importable rpy on my machine, anyway. And we need to update the dependencies of rpy-py, due to changes in the r-base packaging. - -- Alexander Hansen, Ph.D. Fink User Liaison http://finkakh.wordpress.com/ -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.11 (Darwin) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iEYEARECAAYFAk57VnYACgkQB8UpO3rKjQ/KewCgoKElTAYgfp0KI9OJILN+WHOM KekAnimcODp39+stBxUNCRptvbWl3XFL =eGk6 -----END PGP SIGNATURE----- ------------------------------------------------------------------------------ All the data continuously generated in your IT infrastructure contains a definitive record of customers, application performance, security threats, fraudulent activity and more. Splunk takes this data and makes sense of it. Business sense. IT sense. Common sense. http://p.sf.net/sfu/splunk-d2dcopy1 _______________________________________________ Fink-beginners mailing list Fink-beginners@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.apple.fink.beginners Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-beginners
