Thanks, that did it.
Thanks, Herb Wright Contractor Desktop Group NCBI/NLM/NIH wrigh...@ncbi.nlm.nih.gov -----Original Message----- From: Alexander Hansen <alexanderk.han...@gmail.com> Reply-To: "fink-beginners@lists.sourceforge.net" <fink-beginners@lists.sourceforge.net> Date: Thu, 22 Sep 2011 11:38:30 -0400 To: Herb Wright <wrigh...@ncbi.nlm.nih.gov> Cc: "fink-beginners@lists.sourceforge.net" <fink-beginners@lists.sourceforge.net>, "moni...@users.sourceforge.net" <moni...@users.sourceforge.net> Subject: Re: [Fink-beginners] Problem with rpy-py27 >-----BEGIN PGP SIGNED MESSAGE----- >Hash: SHA1 > >On 9/22/11 11:15 AM, Wright, Herbert (NIH/NLM/NCBI) [C] wrote: >> Unfortunately, no success. When I set RHOME to be >> /sw/Library/Frameworks/R.framework/Versions/Current I get this >> error message: >> >> Traceback (most recent call last): File "./rF_expression.py", line >> 5, in <module> from rpy import r File >> "/sw/lib/python2.7/site-packages/rpy.py", line 58, in <module> >> RVERSION = rpy_tools.get_R_VERSION(RHOME) File >> "/sw/lib/python2.7/site-packages/rpy_tools.py", line 99, in >> get_R_VERSION " `%s'.\n" % rexec ) RuntimeError: Couldn't execute >> the R interpreter >> `/sw/Library/Frameworks/R.framework/Versions/Current/bin/R'. >> >> >> In particular, get_R_VERSION in rpy_tools.py looks for the R >> interpreter in the directory $RHOME/bin/ which of course does not >> exist; R is in $RHOME. >> >> >> >> Thanks, Herb Wright Contractor Desktop Group NCBI/NLM/NIH >> >> wrigh...@ncbi.nlm.nih.gov >> >> >> > >Make sure r-base213 and r-base213-dev are installed, and do a "fink >rebuild rpy-py27". That gave an importable rpy on my machine, anyway. > >And we need to update the dependencies of rpy-py, due to changes in >the r-base packaging. > >- -- >Alexander Hansen, Ph.D. >Fink User Liaison >http://finkakh.wordpress.com/ >-----BEGIN PGP SIGNATURE----- >Version: GnuPG v1.4.11 (Darwin) >Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ > >iEYEARECAAYFAk57VnYACgkQB8UpO3rKjQ/KewCgoKElTAYgfp0KI9OJILN+WHOM >KekAnimcODp39+stBxUNCRptvbWl3XFL >=eGk6 >-----END PGP SIGNATURE----- ------------------------------------------------------------------------------ All the data continuously generated in your IT infrastructure contains a definitive record of customers, application performance, security threats, fraudulent activity and more. Splunk takes this data and makes sense of it. Business sense. IT sense. Common sense. http://p.sf.net/sfu/splunk-d2dcopy1 _______________________________________________ Fink-beginners mailing list Fink-beginners@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.apple.fink.beginners Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-beginners
