Dear Alexander,
Here is the output when I run "which gfortran":
[new-host:~] robin% which gfortran
/usr/local/bin/gfortran
The shell is tcsh. Thanks!
On Mon, May 20, 2013 at 12:42 AM, Alexander Hansen <
alexanderk.han...@gmail.com> wrote:
> On 5/19/13 6:22 PM, Jinyi Zhu wrote:
>
>> Dear all,
>>
>> I got a problem when trying to install latest coot on mac via Fink.
>> Below is the error message:
>>
>> g++ -o scitbx/sparse/tests/tst_sparse -w
>> scitbx/sparse/tests/tst_**sparse.o -Llib -Lsource/lib
>> -L/sw/src/fink.build/ccp4-6.3.**0-5/ccp4-6.3.0/lib/cctbx/**
>> cctbx_sources/lib
>> -L/sw/src/fink.build/ccp4-6.3.**0-5/ccp4-6.3.0/lib/cctbx/**
>> cctbx_sources/cctbx_project/**lib
>> scons: done building targets.
>> usr+sys time: 26.58 seconds
>> wall clock time: 8 minutes 13.53 seconds (493.53 seconds total)
>> cd exe
>> cp phaser $CCP4/bin/.
>>
>> cd $CCP4
>>
>> # rapper manual install
>> if [[ -x src/rapper/bin/rapper ]]; then
>> cp src/rapper/bin/rapper $CCP4/bin/.
>> cp src/rapper/lib/libcord.1.0.3.**dylib
>> $CCP4/lib/libcord.1.dylib
>> cp src/rapper/lib/libgc.1.0.3.**dylib
>> $CCP4/lib/libgc.1.dylib
>> cp src/rapper/lib/libxml2.2.dylib $CCP4/lib/libxml2.2.dylib
>> /bin/rm -rf src/rapper/lib/*.dylib
>> mkdir -p share/rapper
>> cp src/rapper/LOOP/params.xml share/rapper/.
>> cp -R src/rapper/data share/rapper/.
>> fi
>>
>>
>> export DYLD_LIBRARY_PATH=$CLIB
>> cd $CLIB/libccp4
>> gfortran -m64 -fno-second-underscore -O2 -fno-second-underscore
>> -L$CLIB -o data/fontpack data/fontpack.o -lccp4f -lccp4c
>> cd data
>> ./fontpack
>> At line 12 of file data/fontpack.f (unit = 10, file = 'fort.10')
>> Fortran runtime error: End of file
>> ### execution of /tmp/fink.gLmIu failed, exit code 2
>> ### execution of /tmp/fink.yRC8F failed, exit code 2
>> Removing runtime build-lock...
>> Removing build-lock package...
>> /sw/bin/dpkg-lockwait -r fink-buildlock-ccp4-6.3.0-5
>> (Reading database ... 128422 files and directories currently installed.)
>> Removing fink-buildlock-ccp4-6.3.0-5 ...
>> Failed: phase installing: ccp4-6.3.0-5 failed
>>
>> Before reporting any errors, please run "fink selfupdate" and try again.
>>
>> If you continue to have issues, please check to see if the FAQ on Fink's
>> website solves the problem. If not, ask on one (not both, please) of
>> these mailing lists:
>>
>> The Fink Users List
>> <fink-users@lists.sourceforge.**net<fink-us...@lists.sourceforge.net>
>> <mailto:fink-users@lists.**sourceforge.net<fink-us...@lists.sourceforge.net>
>> >>
>>
>> The Fink Beginners List
>> <fink-beginners@lists.**sourceforge.net<fink-beginners@lists.sourceforge.net>
>> <mailto:fink-beginners@lists.**sourceforge.net<fink-beginners@lists.sourceforge.net>
>> >>,
>>
>>
>> with a carbon copy to the maintainer:
>>
>> W. G. Scott <wgsc...@users.sourceforge.net
>> <mailto:wgscott@users.**sourceforge.net <wgsc...@users.sourceforge.net>>>
>>
>>
>> Note that this is preferable to emailing just the maintainer directly,
>> since most fink package maintainers do not have access to all possible
>> hardware and software configurations.
>>
>> Please try to include the complete error message in your report. This
>> generally consists of a compiler line starting with e.g. "gcc" or "g++"
>> followed by the actual error output from the compiler.
>>
>> Also include the following system information:
>> Package manager version: 0.34.8
>> Distribution version: selfupdate-rsync Sun May 19 20:14:25 2013, 10.8,
>> x86_64
>> Trees: local/main stable/main local/injected
>> Xcode.app: 4.6.2
>> Xcode command-line tools: 4.6.0.0.1.1365549073
>> ccp4-6.3.0-5 is set to build with only one job.
>>
>> --
>> Best wishes,
>>
>> Jinyi Zhu
>>
>>
>>
> What do you get from running "which gfortran" in a terminal?
> --
> Alexander Hansen, Ph.D.
> Fink User Liaison
> My package updates: http://finkakh.wordpress.com/
>
--
Best wishes,
Jinyi Zhu
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