Hi Frank:

It looks like you have an old version.  1.4 is what is current (rev. 8 for 10.7 
and rev. 4 for the rest).
http://pdb.finkproject.org/pdb/package.php/pymol-py27

I probably need to update all of them to 1.4-8 for consistency, but 1.4-4 
should compile ok.

I'm not sure what is going wrong with the patch in your case, but hopefully the 
simple fix is to update.

Bill



On Sep 1, 2011, at 11:12 AM, fchan wrote:

> Hello,
> I'm running Mac OS 10.6.8 with the current updates on a MacBook Pro 
> and I got this error when I try to install pymol using fink:
> 
> [ -r /sw/fink/dists/stable/main/finkinfo/sci/pymol-py.patch ]
> sed 's|@FINKPREFIX@|/sw|g' < 
> /sw/fink/dists/stable/main/finkinfo/sci/pymol-py.patch | sed 
> 's|python2.X|python2.6|g' | sed 's|pymol-py2X|pymol-py26|g' | patch 
> -p1
> patch: **** rejecting file name with ".." component: 
> ../pynmr_0.37f_src/pmg_tk/startup/pynmr/Crmsd.i
> ### execution of sed failed, exit code 2
> Removing runtime build-lock...
> Removing build-lock package...
> /sw/bin/dpkg-lockwait -r fink-buildlock-pymol-py26-1.2r2-2
> (Reading database ... 40168 files and directories currently installed.)
> Removing fink-buildlock-pymol-py26-1.2r2-2 ...
> Failed: phase patching: pymol-py26-1.2r2-2 failed
> 
> 
> What could be causing this failure in sed.
> 
> Thank you,
> Frank Chan


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