1.2r2-2 is what was in "stable". I suspect the problem is that the user has an unexpected/nonstandard "patch" command somewhere that cannot handle a certain syntax in the pymol-py.patch file. Or else the syntax requires an enhanced "patch" that many of us have via some other package that is often installed? I pushed the current unstable pymol to stable (it's 1.4-7, which does not use the .patch syntax that the questioner's error noted). The "stable" tree gets little love and even fewer bugfixes, unstable is where things are more up-to-date and working well.
dan William G. Scott <[email protected]> said: > Hi Frank: > > It looks like you have an old version. 1.4 is what is current > (rev. 8 for 10.7 and rev. 4 for the rest). > http://pdb.finkproject.org/pdb/package.php/pymol-py27 > > I probably need to update all of them to 1.4-8 for consistency, but > 1.4-4 should compile ok. > > I'm not sure what is going wrong with the patch in your case, but > hopefully the simple fix is to update. > > Bill > > On Sep 1, 2011, at 11:12 AM, fchan wrote: > >> Hello, >> I'm running Mac OS 10.6.8 with the current updates on a MacBook Pro >> and I got this error when I try to install pymol using fink: >> >> [ -r /sw/fink/dists/stable/main/finkinfo/sci/pymol-py.patch ] >> sed 's|@FINKPREFIX@|/sw|g' < >> /sw/fink/dists/stable/main/finkinfo/sci/pymol-py.patch | sed >> 's|python2.X|python2.6|g' | sed 's|pymol-py2X|pymol-py26|g' | patch >> -p1 >> patch: **** rejecting file name with ".." component: >> ../pynmr_0.37f_src/pmg_tk/startup/pynmr/Crmsd.i >> ### execution of sed failed, exit code 2 >> Removing runtime build-lock... >> Removing build-lock package... >> /sw/bin/dpkg-lockwait -r fink-buildlock-pymol-py26-1.2r2-2 >> (Reading database ... 40168 files and directories currently installed.) >> Removing fink-buildlock-pymol-py26-1.2r2-2 ... >> Failed: phase patching: pymol-py26-1.2r2-2 failed >> >> >> What could be causing this failure in sed. >> >> Thank you, >> Frank Chan -- Daniel Macks [email protected] ------------------------------------------------------------------------------ Special Offer -- Download ArcSight Logger for FREE! Finally, a world-class log management solution at an even better price-free! And you'll get a free "Love Thy Logs" t-shirt when you download Logger. Secure your free ArcSight Logger TODAY! http://p.sf.net/sfu/arcsisghtdev2dev _______________________________________________ Fink-users mailing list [email protected] List archive: http://news.gmane.org/gmane.os.macosx.fink.user Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-users
