...but it worked on 10.7 client. I tried to diff the two
build logs, but that's messy, and I'm still not sure what
the failure actually is. Ostensibly it is:
chmod -R a-x
/sw/src/fink.build/root-atlas-3.10.1-1/sw/lib/*
chmod: cannot operate on dangling symlink
`/sw/src/fink.build/root-atlas-3.10.1-
1/sw/lib/libcblas.dylib'
chmod: cannot operate on dangling symlink
`/sw/src/fink.build/root-atlas-3.10.1-
1/sw/lib/libf77blas.dylib'
chmod: cannot operate on dangling symlink
`/sw/src/fink.build/root-atlas-3.10.1-
1/sw/lib/liblapack.dylib'
chmod: cannot operate on dangling symlink
`/sw/src/fink.build/root-atlas-3.10.1-
1/sw/lib/libptcblas.dylib'
chmod: cannot operate on dangling symlink
`/sw/src/fink.build/root-atlas-3.10.1-
1/sw/lib/libptf77blas.dylib'
chmod: cannot operate on dangling symlink
`/sw/src/fink.build/root-atlas-3.10.1-
1/sw/lib/libptlapack.dylib'
### execution of /tmp/fink.zzyP6 failed, exit code 1
### execution of /tmp/fink.JV6pj failed, exit code 1
but obviously this means something went wrong earlier.
Working backwards through the log, there is:
cp
/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/lib/libsatlas.dll
/sw/src/fink.build/root-atlas-3.10.1-1/sw/lib/.
cp: cannot stat
`/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/lib/libsatlas.dll'
: No such file or directory
make[1]: [install_lib] Error 1 (ignored)
cp
/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/lib/libtatlas.dll
/sw/src/fink.build/root-atlas-3.10.1-1/sw/lib/.
cp: cannot stat
`/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/lib/libtatlas.dll'
: No such file or directory
make[1]: [install_lib] Error 1 (ignored)
cp
/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/lib/libsatlas.so
/sw/src/fink.build/root-atlas-3.10.1-1/sw/lib/.
cp: cannot stat
`/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/lib/libsatlas.so':
No such file or directory
make[1]: [install_lib] Error 1 (ignored)
cp
/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/lib/libtatlas.so
/sw/src/fink.build/root-atlas-3.10.1-1/sw/lib/.
cp: cannot stat
`/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/lib/libtatlas.so':
No such file or directory
make[1]: [install_lib] Error 1 (ignored)
and there is
/sw/src/fink.build/atlas-3.10.1-1/gcc -DL2SIZE=4194304
-I/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/include
-I/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/../ATLAS//include
-I/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/../ATLAS//include/contrib
-DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX
-DATL_ARCH_Core2 -DATL_CPUMHZ=3000 -DATL_SSE3 -DATL_SSE2
-DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664 -m64 -DATL_DYLIBS
-DATL_FULL_LAPACK -DATL_NCPU=8 -fPIC -fomit-frame-pointer
-O3 -m64 -mfpmath=sse -m64 -fPIC -o xtune_aff tune_aff.o
ATL_goparallel_noaff.o \
ATL_goparallel_aff.o ATL_log2tlaunch_noaff.o
ATL_log2tlaunch.o \
ATL_thread_start_noaff.o ATL_thread_start.o
/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/lib/libatlas.a
-lpthread -lm
ld: duplicate symbol _ATL_goparallel_noaff in
ATL_goparallel_aff.o and ATL_goparallel_noaff.o
collect2: error: ld returned 1 exit status
make[4]: *** [xtune_aff] Error 1
make[4]: Leaving directory
`/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/tune/threads'
make[3]: [IThreadTune] Error 2 (ignored)
and
/sw/src/fink.build/atlas-3.10.1-1/gcc -DL2SIZE=4194304
-I/sw/src/fink.build/atla
s-3.10.1-1/darwin_bld/include
-I/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/../
ATLAS//include
-I/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/../ATLAS//include/
contrib -DAdd_ -DF77_INTEGER=int -DStringSunStyle
-DATL_OS_OSX -DATL_ARCH_Core2
-DATL_CPUMHZ=3000 -DATL_SSE3 -DATL_SSE2 -DATL_SSE1
-DATL_USE64BITS -DATL_GAS_x86
64 -m64 -DATL_DYLIBS -DATL_FULL_LAPACK -DATL_NCPU=8 -fPIC
-fomit-frame-pointer -
O3 -m64 -mfpmath=sse -m64 -o xprobe_aff probe_aff.o
atlconf_misc.o -lpthread -lm
rm res/probe.out
rm: cannot remove `res/probe.out': No such file or directory
make[4]: [IRun_aff] Error 1 (ignored)
and many like this:
/sw/src/fink.build/atlas-3.10.1-1/ATLAS/ar2 d
/sw/src/fink.build/atlas-3.10.1-1/
darwin_bld/lib/libatlas.a ATL_cgerk__2.o ATL_cgerk__3.o
ATL_cgerk__900003.o ATL_
cgerk__900001.o ATL_cgerk__900006.o ATL_cgerk__900004.o
ATL_cgerk__1.o
ar: ATL_cgerk__2.o: not found in archive
ar: ATL_cgerk__3.o: not found in archive
ar: ATL_cgerk__900003.o: not found in archive
ar: ATL_cgerk__900001.o: not found in archive
ar: ATL_cgerk__900006.o: not found in archive
ar: ATL_cgerk__900004.o: not found in archive
ar: ATL_cgerk__1.o: not found in archive
make[4]: [killlib] Error 1 (ignored)
and several like this:
/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/bin/xsubstr -o
ATL_tMpFiLe -i
/sw/src/fink.build/atlas-3.10.1-1/darwin_bld/../ATLAS//tune/blas/gemm/CASES/zcases.fl
g \
-s '^gcc' 'gcc-fsf-4.8 -fPIC -fomit-frame-pointer
-O3 -m64 -mfpmath=s
se -m64 -fPIC' -s ' gcc' ' gcc-fsf-4.8 -fPIC
-fomit-frame-pointer -O3 -m64 -mfpm
ath=sse -m64 -fPIC'
./xuserflag -i ATL_tMpFiLe -o zcases.flg
gcc-fsf-4.8: warning: '-mcpu=' is deprecated; use '-mtune='
or '-march=' instead
FlagCheck.c:1:0: error: bad value (ultrasparc) for -mtune=
switch
int main(){}
^
cc1: error: unrecognized command line option "-maltivec"
cc1: error: unrecognized command line option "-mabi=altivec"
gcc-fsf-4.8: warning: '-mcpu=' is deprecated; use '-mtune='
or '-march=' instead
FlagCheck.c:1:0: error: bad value (ultrasparc) for -mtune=
switch
int main(){}
^
gcc-fsf-4.8: warning: '-mcpu=' is deprecated; use '-mtune='
or '-march=' instead
FlagCheck.c:1:0: error: bad value (ultrasparc) for -mtune=
switch
int main(){}
^
gcc-fsf-4.8: warning: '-mcpu=' is deprecated; use '-mtune='
or '-march=' instead
FlagCheck.c:1:0: error: bad value (ultrasparc) for -mtune=
switch
int main(){}
^
gcc-fsf-4.8: warning: '-mcpu=' is deprecated; use '-mtune='
or '-march=' instead
FlagCheck.c:1:0: error: bad value (970) for -mtune= switch
int main(){}
^
gcc-fsf-4.8: error: unrecognized command line option
'-mips4'
gcc-fsf-4.8: error: unrecognized command line option
'-mips4'
gcc-fsf-4.8: error: unrecognized command line option
'-mips4'
gcc-fsf-4.8: error: unrecognized command line option
'-mips4'
gcc-fsf-4.8: error: unrecognized command line option '-mvsx'
gcc-fsf-4.8: error: unrecognized command line option
'-mfpu=vfpv3'
But I think they almost all occur in the successful build
log as well.
I can supply the whole log if necessary, let me know.
Package manager version: 0.34.7
Distribution version: selfupdate-rsync Sun Apr 7 20:26:24
2013, 10.6, x86_64
Trees: local/main local/crypto stable/main stable/crypto
unstable/main unstable/crypto
Xcode.app: 3.2.6
Xcode command-line tools: 3.2.6
atlas-3.10.1-1 is set to build with only one job.
TIA,
-- Viv
________________________________________________
Dr Viv Kendon http://quantum.leeds.ac.uk/~viv
tel: +44 113 343 4864 Physics and Astronomy
Quantum Information Group University of Leeds
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