On Sun, 7 Apr 2013, Jack Howarth wrote: > On Sun, Apr 07, 2013 at 11:22:08PM +0100, Viv Kendon wrote: >> On Sun, 7 Apr 2013, Jack Howarth wrote: >> >>> On Sun, Apr 07, 2013 at 10:21:25PM +0100, Viv Kendon wrote: >>>> ...but it worked on 10.7 client. I tried to diff the two build logs, but >>>> that's messy, and I'm still not sure what the failure actually is. >>>> Ostensibly it is: >>>> >>>> chmod -R a-x /sw/src/fink.build/root-atlas-3.10.1-1/sw/lib/* >>>> chmod: cannot operate on dangling symlink >>>> `/sw/src/fink.build/root-atlas-3.10.1- >>>> 1/sw/lib/libcblas.dylib' >>>> chmod: cannot operate on dangling symlink >>>> `/sw/src/fink.build/root-atlas-3.10.1- >>>> 1/sw/lib/libf77blas.dylib' >>>> chmod: cannot operate on dangling symlink >>>> `/sw/src/fink.build/root-atlas-3.10.1- >>>> 1/sw/lib/liblapack.dylib' >>>> chmod: cannot operate on dangling symlink >>>> `/sw/src/fink.build/root-atlas-3.10.1- >>>> 1/sw/lib/libptcblas.dylib' >>>> chmod: cannot operate on dangling symlink >>>> `/sw/src/fink.build/root-atlas-3.10.1- >>>> 1/sw/lib/libptf77blas.dylib' >>>> chmod: cannot operate on dangling symlink >>>> `/sw/src/fink.build/root-atlas-3.10.1- >>>> 1/sw/lib/libptlapack.dylib' >>>> ### execution of /tmp/fink.zzyP6 failed, exit code 1 >>>> ### execution of /tmp/fink.JV6pj failed, exit code 1 >>>> >>>> but obviously this means something went wrong earlier.
Actually, for once, this really is the error, not the symptom! >> <irrelevant log excerpts snipped> >>>> >>>> I can supply the whole log if necessary, let me know. >>> >>> You will have to provide the full compressed log. The atlas build is quite >>> ugly as it's makfiles often try compiles and copies that will fail until >>> it the appropriate one succeeds. I suspect you will find some sort of >>> error in the linkages of libsatlas.dylib and libtatlas.dylib. Afterwards >>> you might also try removing the atlas package before you build the newer one >>> and see if that helps. >>> Jack >>> >>>> Package manager version: 0.34.7 >>>> Distribution version: selfupdate-rsync Sun Apr 7 20:26:24 2013, 10.6, >>>> x86_64 >>>> Trees: local/main local/crypto stable/main stable/crypto unstable/main >>>> unstable/crypto >>>> Xcode.app: 3.2.6 >>>> Xcode command-line tools: 3.2.6 >>>> atlas-3.10.1-1 is set to build with only one job. >> >> I already removed the atlas (but not atlas-shlibs) before running this >> attempt: log attached. > > Do you happen to have coreutils installed on the machine > that completes the packaging but not on the other? If so, > does installing coreutils solve the problem? From your > log, the libstatlas.dylib and libtatlas.dylib files are > copied without complaint into destroot for packaging. > However when chomd is run on the symlinks (which point > these files in %p/lib), the chmod errors occur. both had coreutils installed, the one that failed also had coreutils-default. I removed coreutils-default, and it worked. It then fails to install, but trying again works (because the offending file has been removed in the successful atlas-shlibs install): Unpacking atlas (from .../atlas_3.10.1-1_darwin-x86_64.deb) ... /sw/bin/dpkg: error processing /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/atlas_3.10.1-1_darwin-x86_64.deb (--install): trying to overwrite `/sw/lib/libcblas.dylib', which is also in package atlas-shlibs Preparing to replace atlas-shlibs 3.9.76-3 (using .../atlas-shlibs_3.10.1-1_darwin-x86_64.deb) ... Unpacking replacement atlas-shlibs ... Setting up atlas-shlibs (3.10.1-1) ... many thanks, -- Viv ________________________________________________ Dr Viv Kendon http://quantum.leeds.ac.uk/~viv tel: +44 113 343 4864 Physics and Astronomy Quantum Information Group University of Leeds ------------------------------------------------------------------------------ Minimize network downtime and maximize team effectiveness. Reduce network management and security costs.Learn how to hire the most talented Cisco Certified professionals. Visit the Employer Resources Portal http://www.cisco.com/web/learning/employer_resources/index.html _______________________________________________ Fink-users mailing list [email protected] List archive: http://news.gmane.org/gmane.os.macosx.fink.user Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-users
