On Sun, Apr 07, 2013 at 11:22:08PM +0100, Viv Kendon wrote:
> On Sun, 7 Apr 2013, Jack Howarth wrote:
>
>> On Sun, Apr 07, 2013 at 10:21:25PM +0100, Viv Kendon wrote:
>>> ...but it worked on 10.7 client.  I tried to diff the two build logs, but
>>> that's messy, and I'm still not sure what the failure actually is.
>>> Ostensibly it is:
>>>
>>>  chmod -R a-x /sw/src/fink.build/root-atlas-3.10.1-1/sw/lib/*
>>> chmod: cannot operate on dangling symlink
>>> `/sw/src/fink.build/root-atlas-3.10.1-
>>> 1/sw/lib/libcblas.dylib'
>>> chmod: cannot operate on dangling symlink
>>> `/sw/src/fink.build/root-atlas-3.10.1-
>>> 1/sw/lib/libf77blas.dylib'
>>> chmod: cannot operate on dangling symlink
>>> `/sw/src/fink.build/root-atlas-3.10.1-
>>> 1/sw/lib/liblapack.dylib'
>>> chmod: cannot operate on dangling symlink
>>> `/sw/src/fink.build/root-atlas-3.10.1-
>>> 1/sw/lib/libptcblas.dylib'
>>> chmod: cannot operate on dangling symlink
>>> `/sw/src/fink.build/root-atlas-3.10.1-
>>> 1/sw/lib/libptf77blas.dylib'
>>> chmod: cannot operate on dangling symlink
>>> `/sw/src/fink.build/root-atlas-3.10.1-
>>> 1/sw/lib/libptlapack.dylib'
>>> ### execution of /tmp/fink.zzyP6 failed, exit code 1
>>> ### execution of /tmp/fink.JV6pj failed, exit code 1
>>>
>>> but obviously this means something went wrong earlier.
>
> <irrelevant log excerpts snipped>
>
>>>
>>> I can supply the whole log if necessary, let me know.
>>
>> You will have to provide the full compressed log. The atlas build is quite
>> ugly as it's makfiles often try compiles and copies that will fail until
>> it the appropriate one succeeds. I suspect you will find some sort of
>> error in the linkages of libsatlas.dylib and libtatlas.dylib. Afterwards
>> you might also try removing the atlas package before you build the newer one
>> and see if that helps.
>>           Jack
>>
>>>
>>> Package manager version: 0.34.7
>>> Distribution version: selfupdate-rsync Sun Apr  7 20:26:24 2013, 10.6,
>>> x86_64
>>> Trees: local/main local/crypto stable/main stable/crypto unstable/main
>>> unstable/crypto
>>> Xcode.app: 3.2.6
>>> Xcode command-line tools: 3.2.6
>>> atlas-3.10.1-1 is set to build with only one job.
>
>
> I already removed the atlas (but not atlas-shlibs) before running this 
> attempt: log attached.

Do you happen to have coreutils installed on the machine that completes the 
packaging
but not on the other? If so, does installing coreutils solve the problem? From 
your log,
the libstatlas.dylib and libtatlas.dylib files are copied without complaint into
destroot for packaging. However when chomd is run on the symlinks (which point 
these
files in %p/lib), the chmod errors occur.


>
> many TIA
> -- Viv
> ________________________________________________
> Dr Viv Kendon    http://quantum.leeds.ac.uk/~viv
> tel: +44 113 343 4864      Physics and Astronomy
> Quantum Information Group    University of Leeds



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