Since the new HDF5 has a new library version, the netCDF packages would have to be rebuilt to use it in any case.
I've been forcing rebuilds of netCDF for HDF5 updates, though, ever since I saw a complaint in NCO's configuration when I had a newer HDF5 library installed than what netCDF was built against. On 5/21/13 11:11 AM, Roy Mendelssohn - NOAA Federal wrote: > Thanks! This came up for several reasons. First, just general knowledge. > Second, I was going to try to add the new version of hd5 myself to a > non-fink build, and I was careless at first and let it use /usr/bin/cc > which in fact worked until i got to the netcdf4 part, but then failed, and > failed at the HDF5 level when I set CC=/sw/bin/gcc-4 (which in my fink is > gcc48-compiler). According to the docs, the ncdump that comes with netcdf4 > should be able to read .dods files, but in testing with the present version > in fink with .dods files from two different sources, it fails. I am not > certain where the error is here, whether it is Mac specific or in the netcdf > code, and whether the new hdf5 would make a difference. I have copied Dennis > from Unidata on this also. > > > Also, as a favor can a double check be made that both the present netcdf4 and > netcdf4 fortran will link against this, or whether I will need to do a > rebuild (I believe this was the case in one update to the hdf5 package). > > As always, thanks for keeping these packages up to date! > > -Roy M. > > > > > > > > On May 21, 2013, at 10:58 AM, Alexander Hansen <[email protected]> > wrote: > >> On 5/21/13 10:45 AM, Roy Mendelssohn - NOAA Federal wrote: >>> Hi All: >>> >>> This has probably been answered before, but I couldn't quickly find the >>> answer. I want to find the ./configure settings or make settings used in a >>> package in fink, say for example the hdf5 and netcdf4 packages. Where do I >>> look to find this? >>> >>> Thanks >>> >>> -Roy M. >>> >>> >>> >>> >>> ********************** >>> "The contents of this message do not reflect any position of the U.S. >>> Government or NOAA." >>> ********************** >>> Roy Mendelssohn >>> Supervisory Operations Research Analyst >>> NOAA/NMFS >>> Environmental Research Division >>> Southwest Fisheries Science Center >>> 1352 Lighthouse Avenue >>> Pacific Grove, CA 93950-2097 >>> >>> e-mail: [email protected] (Note new e-mail address) >>> voice: (831)-648-9029 >>> fax: (831)-648-8440 >>> www: http://www.pfeg.noaa.gov/ >>> >>> "Old age and treachery will overcome youth and skill." >>> "From those who have been given much, much will be expected" >>> "the arc of the moral universe is long, but it bends toward justice" -MLK >>> Jr. >>> >>> >> >> The easiest way to get at that information is through >> >> fink dumpinfo -fcompilescript <packagename> >> >> That picks up the explicit parameters that are set in our package >> description, along with parameters which may have been set by default by >> fink. For example: >> >> $ fink dumpinfo -fcompilescript hdf5.7 >> Scanning package description files.......... >> Information about 7368 packages read in 1 seconds. >> compilescript: >> ./configure --prefix=/sw --enable-shared --enable-cxx >> --disable-fortran --with-zlib=/usr --without-mpe --with-szlib=/sw \ >> --without-pthread --disable-parallel --disable-static >> make >> fink-package-precedence >> --prohibit-bdep=hdf5.7,hdf5.7-oldapi,hdf5,hdf5-18 c++/ fortran/ tools/ >> hl/tool >> >> What this does not show is changes made to environment variables outside of >> the CompileScript. You can get that kind of information via >> >> fink dumpinfo -fenv <packagename> >> >> or >> >> fink dumpinfo -eVARIABLE >> >> if you want to pick a specific VARIABLE. >> >> I'm in the middle of updating hdf5 right now--it's going to be 'hdf5.8' >> because they changed the library version--so if you have any special >> requests for a new package variant it's a great time for me to do that. >> -- >> Alexander Hansen, Ph.D. >> Fink User Liaison >> My package updates: http://finkakh.wordpress.com/ > > ********************** > "The contents of this message do not reflect any position of the U.S. > Government or NOAA." > ********************** > Roy Mendelssohn > Supervisory Operations Research Analyst > NOAA/NMFS > Environmental Research Division > Southwest Fisheries Science Center > 1352 Lighthouse Avenue > Pacific Grove, CA 93950-2097 > > e-mail: [email protected] (Note new e-mail address) > voice: (831)-648-9029 > fax: (831)-648-8440 > www: http://www.pfeg.noaa.gov/ > > "Old age and treachery will overcome youth and skill." > "From those who have been given much, much will be expected" > "the arc of the moral universe is long, but it bends toward justice" -MLK Jr. > > ------------------------------------------------------------------------------ Try New Relic Now & We'll Send You this Cool Shirt New Relic is the only SaaS-based application performance monitoring service that delivers powerful full stack analytics. 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