Thanks! -Roy On May 21, 2013, at 11:46 AM, Alexander Hansen <[email protected]> wrote:
> Since the new HDF5 has a new library version, the netCDF packages would have > to be rebuilt to use it in any case. > > I've been forcing rebuilds of netCDF for HDF5 updates, though, ever since I > saw a complaint in NCO's configuration when I had a newer HDF5 library > installed than what netCDF was built against. > > On 5/21/13 11:11 AM, Roy Mendelssohn - NOAA Federal wrote: >> Thanks! This came up for several reasons. First, just general knowledge. >> Second, I was going to try to add the new version of hd5 myself to a >> non-fink build, and I was careless at first and let it use /usr/bin/cc >> which in fact worked until i got to the netcdf4 part, but then failed, and >> failed at the HDF5 level when I set CC=/sw/bin/gcc-4 (which in my fink is >> gcc48-compiler). According to the docs, the ncdump that comes with netcdf4 >> should be able to read .dods files, but in testing with the present version >> in fink with .dods files from two different sources, it fails. I am not >> certain where the error is here, whether it is Mac specific or in the netcdf >> code, and whether the new hdf5 would make a difference. I have copied Dennis >> from Unidata on this also. >> >> >> Also, as a favor can a double check be made that both the present netcdf4 >> and netcdf4 fortran will link against this, or whether I will need to do a >> rebuild (I believe this was the case in one update to the hdf5 package). >> >> As always, thanks for keeping these packages up to date! >> >> -Roy M. >> >> >> >> >> >> >> >> On May 21, 2013, at 10:58 AM, Alexander Hansen <[email protected]> >> wrote: >> >>> On 5/21/13 10:45 AM, Roy Mendelssohn - NOAA Federal wrote: >>>> Hi All: >>>> >>>> This has probably been answered before, but I couldn't quickly find the >>>> answer. I want to find the ./configure settings or make settings used in >>>> a package in fink, say for example the hdf5 and netcdf4 packages. Where >>>> do I look to find this? >>>> >>>> Thanks >>>> >>>> -Roy M. >>>> >>>> >>>> >>>> >>>> ********************** >>>> "The contents of this message do not reflect any position of the U.S. >>>> Government or NOAA." >>>> ********************** >>>> Roy Mendelssohn >>>> Supervisory Operations Research Analyst >>>> NOAA/NMFS >>>> Environmental Research Division >>>> Southwest Fisheries Science Center >>>> 1352 Lighthouse Avenue >>>> Pacific Grove, CA 93950-2097 >>>> >>>> e-mail: [email protected] (Note new e-mail address) >>>> voice: (831)-648-9029 >>>> fax: (831)-648-8440 >>>> www: http://www.pfeg.noaa.gov/ >>>> >>>> "Old age and treachery will overcome youth and skill." >>>> "From those who have been given much, much will be expected" >>>> "the arc of the moral universe is long, but it bends toward justice" -MLK >>>> Jr. >>>> >>>> >>> >>> The easiest way to get at that information is through >>> >>> fink dumpinfo -fcompilescript <packagename> >>> >>> That picks up the explicit parameters that are set in our package >>> description, along with parameters which may have been set by default by >>> fink. For example: >>> >>> $ fink dumpinfo -fcompilescript hdf5.7 >>> Scanning package description files.......... >>> Information about 7368 packages read in 1 seconds. >>> compilescript: >>> ./configure --prefix=/sw --enable-shared --enable-cxx >>> --disable-fortran --with-zlib=/usr --without-mpe --with-szlib=/sw \ >>> --without-pthread --disable-parallel --disable-static >>> make >>> fink-package-precedence >>> --prohibit-bdep=hdf5.7,hdf5.7-oldapi,hdf5,hdf5-18 c++/ fortran/ tools/ >>> hl/tool >>> >>> What this does not show is changes made to environment variables outside of >>> the CompileScript. You can get that kind of information via >>> >>> fink dumpinfo -fenv <packagename> >>> >>> or >>> >>> fink dumpinfo -eVARIABLE >>> >>> if you want to pick a specific VARIABLE. >>> >>> I'm in the middle of updating hdf5 right now--it's going to be 'hdf5.8' >>> because they changed the library version--so if you have any special >>> requests for a new package variant it's a great time for me to do that. >>> -- >>> Alexander Hansen, Ph.D. >>> Fink User Liaison >>> My package updates: http://finkakh.wordpress.com/ >> >> ********************** >> "The contents of this message do not reflect any position of the U.S. >> Government or NOAA." >> ********************** >> Roy Mendelssohn >> Supervisory Operations Research Analyst >> NOAA/NMFS >> Environmental Research Division >> Southwest Fisheries Science Center >> 1352 Lighthouse Avenue >> Pacific Grove, CA 93950-2097 >> >> e-mail: [email protected] (Note new e-mail address) >> voice: (831)-648-9029 >> fax: (831)-648-8440 >> www: http://www.pfeg.noaa.gov/ >> >> "Old age and treachery will overcome youth and skill." >> "From those who have been given much, much will be expected" >> "the arc of the moral universe is long, but it bends toward justice" -MLK Jr. >> >> > > ********************** "The contents of this message do not reflect any position of the U.S. Government or NOAA." ********************** Roy Mendelssohn Supervisory Operations Research Analyst NOAA/NMFS Environmental Research Division Southwest Fisheries Science Center 1352 Lighthouse Avenue Pacific Grove, CA 93950-2097 e-mail: [email protected] (Note new e-mail address) voice: (831)-648-9029 fax: (831)-648-8440 www: http://www.pfeg.noaa.gov/ "Old age and treachery will overcome youth and skill." "From those who have been given much, much will be expected" "the arc of the moral universe is long, but it bends toward justice" -MLK Jr. ------------------------------------------------------------------------------ Try New Relic Now & We'll Send You this Cool Shirt New Relic is the only SaaS-based application performance monitoring service that delivers powerful full stack analytics. Optimize and monitor your browser, app, & servers with just a few lines of code. Try New Relic and get this awesome Nerd Life shirt! http://p.sf.net/sfu/newrelic_d2d_may _______________________________________________ Fink-users mailing list [email protected] List archive: http://news.gmane.org/gmane.os.macosx.fink.user Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-users
