Hi Remko and Kurt, Thanks for your help! I tried updating to the latest XCode and command line tools and the problem persists. I am using OS X 10.9.2. I have gshhg installed and also ran 'fink reinstall gshhg' as suggested. It looks like there is still a cmake error related to finding gshhg. Should it be a problem to have gmt 4.5 installed as well? When I first looked at the error logs, I thought that this problem was related to omp.h. Apple's clang apparently does not support OpenMP. I do have gcc48 installed through fink, but it looks like fink is trying to build gmt5 using clang.
bash-3.2$ fink list -i llvm gcc Information about 8420 packages read in 7 seconds. i gcc48 4.8.2-1001 GNU Compiler Collection Version 4.8 i gcc48-compiler 4.8.2-1001 Compiler Binaries for gcc48 i gcc48-shlibs 4.8.2-1001 Shared libraries for gcc4 i llvm-gcc42 2336.11-7 Apple gcc compiler frontend for llvm i llvm-gcc42-shlibs 2336.11-7 Shared libraries for llvm-gcc42 bash-3.2$ The first error reported is: -- ANSI C header files - found CMake Error at cmake/modules/FindGSHHG.cmake:68 (string): string sub-command STRIP requires two arguments. Call Stack (most recent call first): src/CMakeLists.txt:117 (find_package) The GSHHG error is: -- Could NOT find GSHHG (missing: GSHHG_VERSION GSHHG_EXT) -- Found DCW: /sw/share/gmt/dcw -- Using CFLAGS = '-fstrict-aliasing -O3 -DNDEBUG' -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE) Best, Max On Fri, Apr 4, 2014 at 1:28 PM, Remko Scharroo <re...@altimetrics.com>wrote: > Hi Max and Kurt > > I think cmake gets to this error because the gshhg package is not > installed. I don't know how that can happen, because gmt5 requires gshhg. > The only thing I can think off is that it was removed manually (not through > fink). > > Max, can you please run: > $ fink reinstall gshhg > and then run > $ fink install gmt5 > > That might work. > The only other suspicion I have is that the prefix used for Fink is not > /sw but something with a space in it. Could that be? > > Regards, > Remko > > On 4 Apr 2014, at 20:59, Kurt Schwehr <kurtschw...@yahoo.com> wrote: > > > Hi Max, > > > > The best place to ask this is actually on the GMT mailing list. Remko > has the lead on packaging gmt 4 & 5. I just rebuilt with xcode 5.0.2 and > it works for me. I also just updated to xcode 5.1 and it also works > building gmt5 ( 5.1.1.-1 ) on 10.9. You did not report which Mac OSX > version you are building on and what version of gmt5 fink is trying to > build. > > > > -kurt > > > > http://schwehr.org > > On Friday, April 4, 2014 9:16 AM, Max Rudolph <maxwe...@gmail.com> > wrote: > > Dear Kurt and Fink users, > > I'm having trouble installing GMT5 using fink. The error appears to be > related to cmake rather than GMT itself. Can you advise as to how I might > fix this problem? I have tried to include all of the information required, > but please let me know if you need to see anything else to help diagnose > the problem. > > > > Best Regards, > > Max Rudolph > > > > > > -- Looking for 4 include files stdlib.h, ..., float.h > > -- Looking for 4 include files stdlib.h, ..., float.h - found > > -- Performing Test memchrExists > > -- Performing Test memchrExists - Success > > -- Performing Test freeExists > > -- Performing Test freeExists - Success > > -- ANSI C header files - found > > CMake Error at cmake/modules/FindGSHHG.cmake:68 (string): > > string sub-command STRIP requires two arguments. > > Call Stack (most recent call first): > > src/CMakeLists.txt:117 (find_package) > > ... > > Package manager version: 0.36.3.1 > > Distribution version: selfupdate-rsync Fri Apr 4 08:35:48 2014, 10.9, > x86_64 > > Trees: local/main stable/main > > Xcode.app: 5.0.2 > > Xcode command-line tools: 5.1.0.0.1.1393561416 > > Max. Fink build jobs: 1 > > > > > > > >
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