On 10/25/14, 3:16 PM, Viv Kendon wrote: > > On 25 Oct 2014, at 22:43, Viv Kendon <v...@trellick.net> wrote: > >> >> On 25 Oct 2014, at 22:01, Alexander Hansen <alexanderk.han...@gmail.com> >> wrote: >> >>> On 10/25/14, 1:53 PM, Viv Kendon wrote: >>>> >>>> On 25 Oct 2014, at 21:44, Alexander Hansen <alexanderk.han...@gmail.com> >>>> wrote: >>>> >>>>> On 10/25/14, 1:08 PM, Viv Kendon wrote: >>>>>> >>>>>> On 25 Oct 2014, at 20:23, Viv Kendon <v...@trellick.net> wrote: >>>>>> >>>>>>> >>>>>>> On 25 Oct 2014, at 19:06, Alexander Hansen >>>>>>> <alexanderk.han...@gmail.com> wrote: >>>>>>> >>>>>>>> <snip> >>>>>>>> >>>>>> >>>>>> I added “then” myself, and now the build gets further, but the error is >>>>>> still libcxx-fix.h related (and I’ve updated the subject line too, since >>>>>> we are in principle on to a different package): >>>>>> >>>>>> find . -name NOINSTALL -print # shows which toolboxes won't be >>>>>> installed >>>>>> >>>>>> In file included from ov-netcdf.cc:20: >>>>>> In file included from ./ov-netcdf.h:25: >>>>>> In file included from /sw/include/octave-3.6.4/octave/../octave/oct.h:33: >>>>>> In file included from /sw/include/octave-3.6.4/octave/Matrix.h:30: >>>>>> In file included from /sw/include/octave-3.6.4/octave/mx-base.h:65: >>>>>> In file included from /sw/include/octave-3.6.4/octave/boolSparse.h:29: >>>>>> In file included from >>>>>> /sw/include/octave-3.6.4/octave/Sparse-op-defs.h:31: >>>>>> /sw/include/octave-3.6.4/octave/mx-inlines.cc:311:10: fatal error: >>>>>> 'libcxx-fix.h' file not found >>>>>> #include "libcxx-fix.h" >>>>>> ^ >>>>>> 1 error generated. >>>>>> make: *** [ov-netcdf.o] Error 1 >>>>>> 'make' returned the following error: make: Entering directory >>>>>> `/private/var/tmp/oct-5qlvpF/octcdf/src' >>>>>> /sw/bin/mkoctfile-3.6.4 -DHAVE_OCTAVE_ -v -c ov-netcdf.cc -I/sw/include >>>>>> -I/sw/include -DHAVE_OCTAVE_INT >>>>>> oct-cxx -c -I/sw/include -fPIC -I/sw/include/octave-3.6.4/octave/.. >>>>>> -I/sw/include/octave-3.6.4/octave -I/sw/include -I/sw/include >>>>>> -I/sw/include/freetype2 -I/sw/include -I/sw/include -O3 -MD >>>>>> -I/usr/X11/include -std=c++0x -I/sw/include -I/sw/include -DHAVE_OCTAVE_ >>>>>> -DHAVE_OCTAVE_INT ov-netcdf.cc -o ov-netcdf.o >>>>>> make: Leaving directory `/private/var/tmp/oct-5qlvpF/octcdf/src' >>>>>> error: called from 'pkg>configure_make' in file >>>>>> /sw/share/octave/3.6.4/m/pkg/pkg.m near line 1385, column 9 >>>>>> error: called from: >>>>>> error: /sw/share/octave/3.6.4/m/pkg/pkg.m at line 827, column 5 >>>>>> error: /sw/share/octave/3.6.4/m/pkg/pkg.m at line 383, column 9 >>>>>> error: >>>>>> /sw/src/fink.build/octcdf-nc4-oct364-1.1.7-1/octcdf/octave-forge-comp at >>>>>> line 4, column 1 >>>>>> >>>>>> many thanks, >>>>>> — Viv >>>>> >>>>> No, almost _EVERYTHING_ needs that once it's been introduced. >>>>> >>>>> Could you verify whether libcxx-fix is indeed present in your >>>>> octave364-*-dev ? >>>> >>>> I don’t think so, dpkg -S libcxx-fix returns nothing, and a “find” at the >>>> /sw level does not return it either. I have the following octave packages >>>> installed: >>>> >>>> fink list -ti oct >>>> Information about 10297 packages read in 1 seconds. >>>> i fink-octave-scripts 0.3.2.1-1 Convenience scripts for >>>> Octave add-ons >>>> p liboctave364 [virtual package] >>>> p liboctave364-dev [virtual package] >>>> p liboctave364-gcc49 [virtual package] >>>> p liboctave364-gcc49-dev [virtual package] >>>> p liboctave364-newatlas [virtual package] >>>> p liboctave364-newatlas-dev [virtual package] >>>> p liboctave364-x11 [virtual package] >>>> p liboctave364-x11-dev [virtual package] >>>> p liboctave382 [virtual package] >>>> p liboctave382-gcc49 [virtual package] >>>> p liboctave382-newatlas [virtual package] >>>> p liboctave382-x11 [virtual package] >>>> i octave-atlas-x11 3.8.2-3 MATLAB-like language for >>>> computations >>>> p octave-interpreter [virtual package] >>>> p octave-interpreter-newatlas [virtual package] >>>> p octave-interpreter-x11 [virtual package] >>>> i octave364-atlas-x11 3.6.4-11 MATLAB-like language for >>>> computations >>>> i octave364-atlas-x11-dev 3.6.4-11 MATLAB-like language for >>>> computations >>>> i octave364-atlas-x11-shlibs 3.6.4-11 MATLAB-like >>>> language for computations >>>> i octave364-docs 3.6.4-1 Documentation for Octave, various formats >>>> p octave364-interpreter [virtual package] >>>> p octave364-interpreter-newatlas [virtual package] >>>> p octave364-interpreter-x11 [virtual package] >>>> i octave382-atlas-x11 3.8.2-3 MATLAB-like language for >>>> computations >>>> p octave382-interpreter [virtual package] >>>> p octave382-interpreter-newatlas [virtual package] >>>> p octave382-interpreter-x11 [virtual package] >>>> >>>> many thanks, >>>> — Viv >>>> >>> >>> The if-then that you fixed was _supposed_ to copy that over for 10.9 and >>> later. As a workaround, maybe start a rebuild of octave364-atlas-x11, stop >>> it after the patch phase, and manually do a >>> >>> sudo cp >>> /sw/src/fink.build/octave-3.6.4-11/octave-3.6.4/liboctave/libcxx-fix.h >>> /sw/include/octave-3.6.4/octave/ >> >> Many thanks, I did that, then restarted fink install bundle-octave-atlas. >> It went through the oct364 packages in alphabetical order, so here is how it >> dies for java: >> >> ans = /sw/src/fink.build/java-oct364-1.2.9-3/bld/share/octave/3.6.4/packages >> mkdir (/var/tmp/oct-l9vVbi) >> untar (./java.tar, /var/tmp/oct-l9vVbi) >> >> Error while trying to install Java package: >> JAVA_HOME environment variable does not properly point to a JDK >> Hint: >> JAVA_HOME should usually be set such that either: >> (on *nix:) >> <JAVA_HOME>/jre/lib/<arch>/client/ contains libjvm.so (file or symlink) >> (on OSX:) >> <JAVA_HOME>/../Libraries/ contains a file libclient.dylib >> (on Windows:) >> <JAVA_HOME>/jre/lib/<arch>/ contains a file jvm.cfg >> (<arch> depends on your system hardware, can be i386, x86_64, alpha, arm, >> ...) >> >> Use forward slashes as path separator, also on Windows >> Aborting pkg install >> error: called from 'pre_install' in file >> /private/var/tmp/oct-l9vVbi/java/pre_install.m near line 115, column 5 >> error: called from: >> error: /sw/share/octave/3.6.4/m/pkg/pkg.m at line 827, column 5 >> error: /sw/share/octave/3.6.4/m/pkg/pkg.m at line 383, column 9 >> error: /sw/src/fink.build/java-oct364-1.2.9-3/java/octave-forge-comp at >> line 4, column 1 >> >> I then manually verified that octcdf-nc4-oct364 now installs fine. >> >> Will I need to manually copy libcxx-fix.h for octave382 as well? And is the >> file identical to the octave364 copy, or do I need to start a rebuild for >> octave382 to get the corresponding file? >> > > I tried a few oct832 packages (without doing anything about libcxx-fix.h for > octave382) and they all seem to die in the same way with a java error that is > very different from the above: > > mkdir -p bld/share/octave/3.8.2/packages bld/lib/octave/3.8.2/packages > `which xvfb-run` > /sw/src/fink.build/optiminterp-atlas-oct382-0.3.4-3/optiminterp/octave-forge-comp > which xvfb-run > No Java runtime present, requesting install. > 2014-10-25 23:07:33.340 octave-cli-3.8.2[45245:d07] JLRequestRuntimeInstall: > Error calling: CFMessagePortCreateRemote > ### execution of /tmp/fink.zx8W6 failed, exit code 97 > Removing runtime build-lock... > Removing build-lock package... > /sw/bin/dpkg-lockwait -r fink-buildlock-optiminterp-atlas-oct382-0.3.4-3 > > > java -version > java version "1.7.0_51" > Java(TM) SE Runtime Environment (build 1.7.0_51-b13) > Java HotSpot(TM) 64-Bit Server VM (build 24.51-b03, mixed mode) > > Package manager version: 0.38.1 > Distribution version: selfupdate-rsync Sat Oct 25 22:57:26 2014, 10.9, x86_64 > Trees: local/main stable/main > Xcode.app: 6.0.1 > Xcode command-line tools: 6.0.0.0.1.1410400753 > > > Anyway, it is end of the day here. Happy to keep testing tomorrow, if it > would be useful. > > many thanks, > — Viv >
Thanks for testing! The libcxx-fix.h files are the same for both Octave versions. It may well be present for your octave382 build, though--more bad shell scripting in the 364 version from me which wasn't present in the 382 version. -- Alexander Hansen, Ph.D. Fink User Liaison My package updates: http://finkakh.wordpress.com/ ------------------------------------------------------------------------------ _______________________________________________ Fink-users mailing list Fink-users@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.macosx.fink.user Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-users
