Having trouble unpacking openmpi:
/sw/bin/dpkg-lockwait -i
/sw/fink/dists/stable/main/binary-darwin-x86_64/devel/openmpi_1.10.0-1_darwin-x86_64.deb
(Reading database ... 380816 files and directories currently installed.)
Preparing to replace openmpi 1.10.0-1 (using
.../openmpi_1.10.0-1_darwin-x86_64.deb) ...
Unpacking replacement openmpi ...
Setting up openmpi (1.10.0-1) ...
Clearing dependency_libs of .la files being installed
ln: /sw/bin/vtCC: File exists
/sw/bin/dpkg: error processing openmpi (--install):
subprocess post-installation script returned error exit status 1
Errors were encountered while processing:
openmpi
It didn’t give me a “please include this” set of info, let me know if I left
out anything you need about my configuration: 10.9.5, case-sensitive, fink -V
Package manager version: 0.39.1
fink list -t openmpi
Information about 9257 packages read in 0 seconds.
openmpi 1.10.0-1 MPI implementation for parallel computing
i openmpi-shlibs 1.10.0-1 Shared libraries for openmpi package
gcc -v
Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr
--with-gxx-include-dir=/usr/include/c++/4.2.1
Apple LLVM version 6.0 (clang-600.0.57) (based on LLVM 3.5svn)
Target: x86_64-apple-darwin13.4.0
ls -l /sw/bin/vt*
8 lrwxr-xr-x 1 root admin 9 Oct 4 15:56 /sw/bin/vtCC@ -> vtwrapper
8 lrwxr-xr-x 1 root admin 9 Oct 4 15:56 /sw/bin/vtc++@ -> vtwrapper
8 lrwxr-xr-x 1 root admin 9 Oct 4 15:56 /sw/bin/vtcxx@ -> vtwrapper
8 lrwxr-xr-x 1 root admin 9 Oct 4 15:56 /sw/bin/vtf77@ -> vtwrapper
8 lrwxr-xr-x 1 root admin 9 Oct 4 15:56 /sw/bin/vtf90@ -> vtwrapper
624 -rwxr-xr-x 1 root admin 318760 Oct 4 14:53 /sw/bin/vtfilter*
664 -rwxr-xr-x 1 root admin 336860 Oct 4 14:53 /sw/bin/vtfilter-mpi*
8 lrwxr-xr-x 1 root admin 8 Oct 4 15:56 /sw/bin/vtfiltergen@ ->
vtfilter
8 lrwxr-xr-x 1 root admin 12 Oct 4 15:56 /sw/bin/vtfiltergen-mpi@ ->
vtfilter-mpi
8 lrwxr-xr-x 1 root admin 9 Oct 4 15:56 /sw/bin/vtfort@ -> vtwrapper
24 -rwxr-xr-x 1 root admin 9205 Oct 4 14:53 /sw/bin/vtrun*
8 -rwxr-xr-x 1 root admin 1612 Oct 4 14:53 /sw/bin/vtsetup*
1096 -rw-r--r-- 1 root admin 557402 Oct 4 14:53 /sw/bin/vtsetup.jar
1104 -rwxr-xr-x 1 root admin 563296 Oct 4 14:53 /sw/bin/vtunify*
1272 -rwxr-xr-x 1 root admin 649392 Oct 4 14:53 /sw/bin/vtunify-mpi*
328 -rwxr-xr-x 1 root admin 166016 Oct 4 14:53 /sw/bin/vtwrapper*
(the 14:53 timestamps are from when I tried it first, and openmpi-shlibs was
installed successfully; 15:56 is when it failed the second time, after
restarting “update-all")
many thanks,
— Viv
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