> On Oct 4, 2015, at 09:37, Viv Kendon <v...@trellick.org> wrote:
>
> Having trouble unpacking openmpi:
>
> /sw/bin/dpkg-lockwait -i
> /sw/fink/dists/stable/main/binary-darwin-x86_64/devel/openmpi_1.10.0-1_darwin-x86_64.deb
> (Reading database ... 380816 files and directories currently installed.)
> Preparing to replace openmpi 1.10.0-1 (using
> .../openmpi_1.10.0-1_darwin-x86_64.deb) ...
> Unpacking replacement openmpi ...
> Setting up openmpi (1.10.0-1) ...
> Clearing dependency_libs of .la files being installed
> ln: /sw/bin/vtCC: File exists
> /sw/bin/dpkg: error processing openmpi (--install):
> subprocess post-installation script returned error exit status 1
> Errors were encountered while processing:
> openmpi
>
> It didn’t give me a “please include this” set of info, let me know if I left
> out anything you need about my configuration: 10.9.5, case-sensitive, fink
> -V
> Package manager version: 0.39.1
>
> fink list -t openmpi
> Information about 9257 packages read in 0 seconds.
> openmpi 1.10.0-1 MPI implementation for parallel computing
> i openmpi-shlibs 1.10.0-1 Shared libraries for openmpi package
>
> gcc -v
> Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr
> --with-gxx-include-dir=/usr/include/c++/4.2.1
> Apple LLVM version 6.0 (clang-600.0.57) (based on LLVM 3.5svn)
> Target: x86_64-apple-darwin13.4.0
>
> ls -l /sw/bin/vt*
> 8 lrwxr-xr-x 1 root admin 9 Oct 4 15:56 /sw/bin/vtCC@ -> vtwrapper
> 8 lrwxr-xr-x 1 root admin 9 Oct 4 15:56 /sw/bin/vtc++@ -> vtwrapper
> 8 lrwxr-xr-x 1 root admin 9 Oct 4 15:56 /sw/bin/vtcxx@ -> vtwrapper
> 8 lrwxr-xr-x 1 root admin 9 Oct 4 15:56 /sw/bin/vtf77@ -> vtwrapper
> 8 lrwxr-xr-x 1 root admin 9 Oct 4 15:56 /sw/bin/vtf90@ -> vtwrapper
> 624 -rwxr-xr-x 1 root admin 318760 Oct 4 14:53 /sw/bin/vtfilter*
> 664 -rwxr-xr-x 1 root admin 336860 Oct 4 14:53 /sw/bin/vtfilter-mpi*
> 8 lrwxr-xr-x 1 root admin 8 Oct 4 15:56 /sw/bin/vtfiltergen@ ->
> vtfilter
> 8 lrwxr-xr-x 1 root admin 12 Oct 4 15:56 /sw/bin/vtfiltergen-mpi@
> -> vtfilter-mpi
> 8 lrwxr-xr-x 1 root admin 9 Oct 4 15:56 /sw/bin/vtfort@ ->
> vtwrapper
> 24 -rwxr-xr-x 1 root admin 9205 Oct 4 14:53 /sw/bin/vtrun*
> 8 -rwxr-xr-x 1 root admin 1612 Oct 4 14:53 /sw/bin/vtsetup*
> 1096 -rw-r--r-- 1 root admin 557402 Oct 4 14:53 /sw/bin/vtsetup.jar
> 1104 -rwxr-xr-x 1 root admin 563296 Oct 4 14:53 /sw/bin/vtunify*
> 1272 -rwxr-xr-x 1 root admin 649392 Oct 4 14:53 /sw/bin/vtunify-mpi*
> 328 -rwxr-xr-x 1 root admin 166016 Oct 4 14:53 /sw/bin/vtwrapper*
>
> (the 14:53 timestamps are from when I tried it first, and openmpi-shlibs was
> installed successfully; 15:56 is when it failed the second time, after
> restarting “update-all")
>
> many thanks,
> — Viv
> ———————————————————————————————————————
There’s a note in the packaging about “case sensitive hackery”, but it appears
not to have taken effect. It looks like vtCC still gets installed, and then
the PostInstScript tries to run
ln -s /sw/bin/vtwrapper /sw/bin/vtCC
which fails due to vtCC already existing.
Since I don’t have a case-sensisitve system handy, could I please get you to do
a “fink -kK rebuild openmpi” ? That way I can do some forensics on the build
and root directories to see whether the scripts are doing the right thing?
The first thing to look for is the output of "ls
/sw/src/fink.build/root-openmpi-1.10.0-1/sw/bin/vt*
--
Alexander Hansen, Ph.D.
Fink User Liaison
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