>> >> A rebuild normally includes a reinstall if you’re building the same version >> as the currently installed one, so that’s not surprising. However, if those >> files were indeed changed by the openmpi-shlibs install, that would be >> another matter, since the pre-removal and post-install scripts are run for >> the main package only. >> >> At least we’ve determined that vtCC wasn’t present in the root directory. >> What happens if you remove openmpi (leaving the shlibs) and install it? > > openmpi is not installed (according to fink), which is why only > openmpi-shlibs was reinstalled. So trying to install openmpi gives the same > error: > > fink list openmpi > Information about 9257 packages read in 1 seconds. > openmpi 1.10.0-1 MPI implementation for parallel computing > i openmpi-shlibs 1.10.0-1 Shared libraries for openmpi package > fink install openmpi > Password: > Information about 9257 packages read in 0 seconds. > The following package will be installed or updated: > openmpi > Reading buildlock packages... > All buildlocks accounted for. > /sw/bin/dpkg-lockwait -i > /sw/fink/dists/stable/main/binary-darwin-x86_64/devel/openmpi_1.10.0-1_darwin-x86_64.deb > (Reading database ... 380816 files and directories currently installed.) > Preparing to replace openmpi 1.10.0-1 (using > .../openmpi_1.10.0-1_darwin-x86_64.deb) ... > Unpacking replacement openmpi ... > Setting up openmpi (1.10.0-1) ... > Clearing dependency_libs of .la files being installed > ln: /sw/bin/vtCC: File exists > /sw/bin/dpkg: error processing openmpi (--install): > subprocess post-installation script returned error exit status 1 > Errors were encountered while processing: > openmpi > ### execution of /sw/bin/dpkg-lockwait failed, exit code 1 > Failed: can't install package openmpi-1.10.0-1 > > ls -l /sw/bin/vt* > 8 lrwxr-xr-x 1 root admin 9 Oct 4 20:36 /sw/bin/vtCC@ -> vtwrapper > 8 lrwxr-xr-x 1 root admin 9 Oct 4 20:36 /sw/bin/vtc++@ -> vtwrapper > 8 lrwxr-xr-x 1 root admin 9 Oct 4 20:36 /sw/bin/vtcxx@ -> vtwrapper > 8 lrwxr-xr-x 1 root admin 9 Oct 4 20:36 /sw/bin/vtf77@ -> vtwrapper > 8 lrwxr-xr-x 1 root admin 9 Oct 4 20:36 /sw/bin/vtf90@ -> vtwrapper > 624 -rwxr-xr-x 1 root admin 318760 Oct 4 19:48 /sw/bin/vtfilter* > 664 -rwxr-xr-x 1 root admin 336860 Oct 4 19:48 /sw/bin/vtfilter-mpi* > 8 lrwxr-xr-x 1 root admin 8 Oct 4 20:36 /sw/bin/vtfiltergen@ -> > vtfilter > 8 lrwxr-xr-x 1 root admin 12 Oct 4 20:36 /sw/bin/vtfiltergen-mpi@ > -> vtfilter-mpi > 8 lrwxr-xr-x 1 root admin 9 Oct 4 20:36 /sw/bin/vtfort@ -> > vtwrapper > 24 -rwxr-xr-x 1 root admin 9205 Oct 4 19:48 /sw/bin/vtrun* > 8 -rwxr-xr-x 1 root admin 1612 Oct 4 19:48 /sw/bin/vtsetup* > 1096 -rw-r--r-- 1 root admin 557402 Oct 4 19:48 /sw/bin/vtsetup.jar > 1104 -rwxr-xr-x 1 root admin 563296 Oct 4 19:48 /sw/bin/vtunify* > 1272 -rwxr-xr-x 1 root admin 649392 Oct 4 19:48 /sw/bin/vtunify-mpi* > 328 -rwxr-xr-x 1 root admin 166016 Oct 4 19:48 /sw/bin/vtwrapper* > > 19:48 is the rebuild time, i.e., when the openmpi deb was created, 20:36 is > the attempt to install openmpi time. So for the record, the 18:02 timestamp > above was from another failed attempt to install openmpi, when I kicked off > update-all again. > > fink remove openmpi > Information about 9257 packages read in 1 seconds. > WARNING: openmpi is not installed, skipping. > No packages to remove > > So it looks like it doesn’t clean up after the failed attempt to install. Is > there another way to get rid of the not quite installed files and try again? > > many thanks, > — Viv > >
Use “sudo dpkg -r openmpi” to remove the partially installed package (dpkg has a slightly different view of what is installed than fink does). Then verify whether /sw/bin/vtCC is still around. If it is, manually remove it. If not then try to “fink install openmpi” again. -- Alexander Hansen, Ph.D. Fink User Liaison ------------------------------------------------------------------------------ _______________________________________________ Fink-users mailing list Fink-users@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.macosx.fink.user Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-users
