On Mar 16, 2007, at 9:17 PM, Charless Fowlkes wrote:

I'm interested in modeling reaction-diffusion in biological systems. We have nice data from imaging techniques that provide quantitative estimates
of protein and mRNA concentrations in a developing fruitfly embryo.

Very interesting, and nice imagery. I know precious little about gene expression, but we'll help where we can.

Thanks!  This is quite useful.

Glad to help.

Are there command line options to get gmsh 2 to spit out
1.0 file format?

It's on our to-do list to figure out. I'll see what I can come up with.

I assume the ordering is correct as far as the solver goes :-)

I'm not sure I'd jump to that conclusion. ;^)

I don't see the face inversion problem that you're getting when I use gmsh 1.6something, so evidently manual 1.0 export isn't the same thing. Triangular prisms have worked OK for us; that warning was generally referring to things with more faces, but evidently even triangles aren't reliable.


--
Jonathan E. Guyer, PhD
Metallurgy Division
National Institute of Standards and Technology
<http://www.metallurgy.nist.gov/>

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