On 16/01/2017 00:52, Raul Dias wrote:
The  packets are getting back  That has being stablished already.

With Wireshark at the 2008R2 end?

I am looking for possible reasons it would disregard the answer, but accept when using a non-freeipa bind9 one.

Look at wireshark detail on both sets of responses; check for any differences including the flags. You're sure one of the servers isn't answering with a REFUSED answer for example? (That is, one of the bind servers might not allow queries from the source address of the 2008R2 server)

Also compare the bind configs. For example, is DNSSEC enabled in one but not the other?

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