Hi Bruce, Thanks for the help. What does the -monkey switch do? Does it remove the requirement to change the image header to 1mm from acquired resolution?
Thanks, Matt. -----Original Message----- From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] Sent: Thursday, December 24, 2009 6:49 PM To: Matt Glasser Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Talairach on Non-human Primates Hi Matt, it shouldn't be needed for non-human primates, and in fact will probably mess things up. I thought the -monkey switch disabled it, but I could be wrong. cheers Bruce On Thu, 24 Dec 2009, Matt Glasser wrote: > I am wondering if it is necessary to perform the taltransform (or care about > the results when it fails) to get good surfaces of non-human primate brains? > I know I can go in and manually edit it to get it right, but I would rather > not do this if it isn't critical for surface generation. Is it okay to just > use -notalcheck and ignore any errors? My brains are already AC/PC aligned > in a non-human primate specific standard space. > > > > Thanks, > > > Matt. > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
