actually, I can't find it anymore. It used to turn off all the things that weren't appropriate for non-humans (e.g. talairach, aseg, etc...). Not sure when it was deprecated. Nick: do you know?
merry christmas! Bruce On Thu, 24 Dec 2009, Matt Glasser wrote: > Hi Bruce, > > Thanks for the help. What does the -monkey switch do? Does it remove the > requirement to change the image header to 1mm from acquired resolution? > > Thanks, > > Matt. > > -----Original Message----- > From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] > Sent: Thursday, December 24, 2009 6:49 PM > To: Matt Glasser > Cc: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Talairach on Non-human Primates > > Hi Matt, > > it shouldn't be needed for non-human primates, and in fact will probably > mess things up. I thought the -monkey switch disabled it, but I could be > wrong. > > cheers > Bruce > On Thu, 24 Dec 2009, Matt Glasser wrote: > >> I am wondering if it is necessary to perform the taltransform (or care > about >> the results when it fails) to get good surfaces of non-human primate > brains? >> I know I can go in and manually edit it to get it right, but I would > rather >> not do this if it isn't critical for surface generation. Is it okay to > just >> use -notalcheck and ignore any errors? My brains are already AC/PC > aligned >> in a non-human primate specific standard space. >> >> >> >> Thanks, >> >> >> Matt. >> >> > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
