have you tried clicking the "redraw" button? On Wed, 10 Feb 2010, Daniel Ferreira Padilla wrote:
> Dear Freesurfer users, > > > > I hope you could help me with that problem. I do the recon-all preprocessing > step and then I try tksurfer. But the following error comes up. Moreover > tksurfer window open up but it looks like 'empty'. Please find it attached. > > > > Thank you very much! > > > > Daniel Ferreira > > > > > > -------- freesurfer-Linux-centos4-stable-pub-v4.5.0 -------- > Setting up environment for FreeSurfer/FS-FAST (and FSL) > FREESURFER_HOME /home/Neuropsicologia/freesurfer > FSFAST_HOME /home/Neuropsicologia/freesurfer/fsfast > FSF_OUTPUT_FORMAT nii > SUBJECTS_DIR /home/Neuropsicologia/DANI/subjects > MNI_DIR /home/Neuropsicologia/freesurfer/mni > FSL_DIR /home/Neuropsicologia/fsl > > > neuropsicolo...@linux-tand:~> cd DANI/subjects > > > neuropsicolo...@linux-tand:~/DANI/subjects> tksurfer GJ25_3D lh inflated > -aparc -gray > surfer: current subjects dir: /home/Neuropsicologia/DANI/subjects > surfer: not in "scripts" dir ==> using cwd for session root > surfer: session root data dir ($session) set to: > surfer: /home/Neuropsicologia/DANI/subjects > surfer: Reading header info from > /home/Neuropsicologia/DANI/subjects/GJ25_3D/mri/T1.mgz > surfer: vertices=123902, faces=247800 > surfer: curvature read: min=-1.349975 max=2.259740 > reading colortable from annotation file... > colortable with 36 entries read (originally > /autofs/space/amaebi_026/users/buckner_cortical_atlas/scripts/colortable_fin > al.txt) > Found embedded color table in annotation. > surfer: single buffered window > surfer: tkoInitWindow(GJ25_3D) > surfer: using interface > /home/Neuropsicologia/freesurfer/lib/tcl/tksurfer.tcl > Reading /home/Neuropsicologia/freesurfer/lib/tcl/tkm_common.tcl > Reading /home/Neuropsicologia/freesurfer/lib/tcl/tkm_wrappers.tcl > Reading /home/Neuropsicologia/freesurfer/lib/tcl/fsgdfPlot.tcl > Reading /home/Neuropsicologia/freesurfer/lib/tcl/tkUtils.tcl > Successfully parsed tksurfer.tcl > reading white matter vertex locations... > % > > > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
