you can try some of the things suggested here: https://surfer.nmr.mgh.harvard.edu/fswiki/TksurferDisplayProblems
although those suggestions are targetted at the 'sliver' problem, where you get a display of only a tiny section of the brain. you dont seem to be getting any display. n. On Wed, 2010-02-10 at 16:18 +0000, Daniel Ferreira Padilla wrote: > Yes, I click over the redraw button but it doesn’t work. It is strange but > despite tksurfer window is empty, when I click on it, labels and values > appear in tksurfer tools window. > > Any other idea? > > Thank you very much in advance > > -----Mensaje original----- > De: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] > Enviado el: miércoles, 10 de febrero de 2010 15:49 > Para: Daniel Ferreira Padilla > CC: freesurfer@nmr.mgh.harvard.edu > Asunto: Re: [Freesurfer] tksurfer error > > have you tried clicking the "redraw" button? > On Wed, 10 Feb 2010, Daniel > Ferreira Padilla wrote: > > > Dear Freesurfer users, > > > > > > > > I hope you could help me with that problem. I do the recon-all > preprocessing > > step and then I try tksurfer. But the following error comes up. Moreover > > tksurfer window open up but it looks like 'empty'. Please find it > attached. > > > > > > > > Thank you very much! > > > > > > > > Daniel Ferreira > > > > > > > > > > > > -------- freesurfer-Linux-centos4-stable-pub-v4.5.0 -------- > > Setting up environment for FreeSurfer/FS-FAST (and FSL) > > FREESURFER_HOME /home/Neuropsicologia/freesurfer > > FSFAST_HOME /home/Neuropsicologia/freesurfer/fsfast > > FSF_OUTPUT_FORMAT nii > > SUBJECTS_DIR /home/Neuropsicologia/DANI/subjects > > MNI_DIR /home/Neuropsicologia/freesurfer/mni > > FSL_DIR /home/Neuropsicologia/fsl > > > > > > neuropsicolo...@linux-tand:~> cd DANI/subjects > > > > > > neuropsicolo...@linux-tand:~/DANI/subjects> tksurfer GJ25_3D lh inflated > > -aparc -gray > > surfer: current subjects dir: /home/Neuropsicologia/DANI/subjects > > surfer: not in "scripts" dir ==> using cwd for session root > > surfer: session root data dir ($session) set to: > > surfer: /home/Neuropsicologia/DANI/subjects > > surfer: Reading header info from > > /home/Neuropsicologia/DANI/subjects/GJ25_3D/mri/T1.mgz > > surfer: vertices=123902, faces=247800 > > surfer: curvature read: min=-1.349975 max=2.259740 > > reading colortable from annotation file... > > colortable with 36 entries read (originally > > > /autofs/space/amaebi_026/users/buckner_cortical_atlas/scripts/colortable_fin > > al.txt) > > Found embedded color table in annotation. > > surfer: single buffered window > > surfer: tkoInitWindow(GJ25_3D) > > surfer: using interface > > /home/Neuropsicologia/freesurfer/lib/tcl/tksurfer.tcl > > Reading /home/Neuropsicologia/freesurfer/lib/tcl/tkm_common.tcl > > Reading /home/Neuropsicologia/freesurfer/lib/tcl/tkm_wrappers.tcl > > Reading /home/Neuropsicologia/freesurfer/lib/tcl/fsgdfPlot.tcl > > Reading /home/Neuropsicologia/freesurfer/lib/tcl/tkUtils.tcl > > Successfully parsed tksurfer.tcl > > reading white matter vertex locations... > > % > > > > > > > > > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
