I was running a subject, and got this error: recon-all exited with ERRORS at Wed Jul 28 21:50:47 EDT 2010
make: *** [/usr/local/freesurfer/freesurfer-4.5.0/subjects/zhang_r/mri/aseg.mgz] Error 1 The disk is not full, and permissions are in order. I've run several other subjects with no problems. Initially my command line was "recon-all -autorecon2 -s zhang_r"; then I tried again except with "-make autorecon2", and saw the same error. It exits at SubCort Seg (mri_ca_label -align -nobigventricles norm.mgz transforms/talairach.m3z /usr/local/freesurfer/current/average/RB_all_2008-03-26.gca aseg.auto_noCCseg.mgz) The last several lines of output are: mri_ca_label GCA sequential renormalization: label 28 not consistently computed. not using caudate to estimate GM means setting label Right_VentralDC based on Left_VentralDC = 1.15 x + 0 estimating mean gm scale to be 1.01 x + 0.0 estimating mean wm scale to be 1.00 x + 0.0 estimating mean csf scale to be 1.01 x + 0.0 saving intensity scales to aseg.auto_noCCseg.label_intensities.txt Linux cwatson.homeunix.net 2.6.18-194.3.1.el5.centos.plus #1 SMP Wed May 19 09:14:46 EDT 2010 x86_64 x86_64 x86_64 GNU/Linux Any ideas? Chris _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
