Thanks, that did the trick. Chris Nick Schmansky wrote: > you will need to get a fixed version of mri_ca_label from here: > > ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc > > n. > > On Wed, 2010-07-28 at 22:40 -0400, Watson, Christopher wrote: > >> I was running a subject, and got this error: >> recon-all exited with ERRORS at Wed Jul 28 21:50:47 EDT 2010 >> >> make: *** >> [/usr/local/freesurfer/freesurfer-4.5.0/subjects/zhang_r/mri/aseg.mgz] Error >> 1 >> >> The disk is not full, and permissions are in order. I've run several other >> subjects with no problems. Initially my command line was "recon-all >> -autorecon2 -s zhang_r"; then I tried again except with "-make autorecon2", >> and saw the same error. >> >> It exits at SubCort Seg >> (mri_ca_label -align -nobigventricles norm.mgz transforms/talairach.m3z >> /usr/local/freesurfer/current/average/RB_all_2008-03-26.gca >> aseg.auto_noCCseg.mgz) >> >> The last several lines of output are: >> mri_ca_label GCA sequential renormalization: label 28 not consistently >> computed. >> >> not using caudate to estimate GM means >> setting label Right_VentralDC based on Left_VentralDC = 1.15 x + 0 >> estimating mean gm scale to be 1.01 x + 0.0 >> estimating mean wm scale to be 1.00 x + 0.0 >> estimating mean csf scale to be 1.01 x + 0.0 >> saving intensity scales to aseg.auto_noCCseg.label_intensities.txt >> Linux cwatson.homeunix.net 2.6.18-194.3.1.el5.centos.plus #1 SMP Wed May 19 >> 09:14:46 EDT 2010 x86_64 x86_64 x86_64 GNU/Linux >> >> Any ideas? >> Chris >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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