Hi Scott - Could you try running bedpostx on the dmri/ directory directly and see what if any error you get?
a.y On Fri, 16 Dec 2011, Scott Hayes wrote: > Hi, > The following files & directories are listed directly under dmri.bedpostX: > > bvals commands.txt logs > nodif_brain_mask.nii.gz > bvecs diff_slices monitor xfms > > --Scott > > > Anastasia Yendiki > Fri, 16 Dec 2011 09:43:47 -0800 > > Hi Scott - Are there any files created directly under dmri.bedpostX? > > a.y > > On Fri, 16 Dec 2011, Scott Hayes wrote: > >> Hi, >> After I run step 2 of tracula (>trac-all -c config_DTI_B.txt -bedp), I >> am missing multiple bedpost output files (e.g., mergedph1samples.nii). >> Examining the output, it looks like data from only one slice was >> written (dmri.bedpostX/diff_slices/data_slice_0002). This issue has >> replicated across multiple subjects. I'm processing data locally on >> mac os 10.6.8 (16 GB RAM; two 3.2 quadcore processors, which should be >> able to handle bedpost), using FSL 4.1.9. I don't see any errors in >> the tracula log files (until I run -path), and no complaints in the >> terminal window (which writes: Queuing parallel processing stage >> 0 slices processed >> 1 slices processed >> 1 slices processed >> etc... >> >> Any insight as to what might be causing the issue? >> >> Thanks, >> Scott >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
