Actually, before you do that, can you check two things 1. Does the raw data (eg, f.nii) look ok? 2. Does the talairach transform for this subject look ok? doug
On 09/24/2012 04:02 PM, Douglas N Greve wrote: > Can you upload it to our file drop at > www.nmr.mgh.harvard.edu/facility/filedrop/ > > > > On 09/24/2012 02:58 PM, Andrew Bock wrote: >> It looks like a very patchy, warped version of the brain. I find that >> this is true for all subjects >> (/fsfast-functional/sess???/bold/001/fmcpr.up.sm5.mni305.2mm.nii.gz). >> I used both freeview and fslview to visualize the images. >> >> On Fri, Sep 21, 2012 at 4:06 PM, Douglas N Greve >> <gr...@nmr.mgh.harvard.edu<mailto:gr...@nmr.mgh.harvard.edu>> wrote: >> >> yes, you would expect that. what does it look like? how are you >> visualizing it? >> >> On 09/20/2012 06:18 PM, Andrew Bock wrote: >> > Hello, >> > >> > I am attempting to run preproc-sess on my functional data, and am >> > following the tutorial found here: >> > >> >> http://surfer.nmr.mgh.harvard.edu/fswiki/FsFastTutorialV5.1/FsFastPreProc >> > >> > I downloaded the tutorial data, and find that when I view >> > fmcpr.up.sm5.mni305.2mm.nii.gz it looks quite ugly (i.e. does >> not look >> > like a brain). I would expect this file to look like the fsaverage >> > brain, is that not correct? >> > >> > Andrew >> > >> > >> > >> > >> > >> > >> > _______________________________________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu >> <mailto:Freesurfer@nmr.mgh.harvard.edu> >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu<mailto:gr...@nmr.mgh.harvard.edu> >> Phone Number: 617-724-2358<tel:617-724-2358> >> Fax: 617-726-7422<tel:617-726-7422> >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to >> whom it is >> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners >> Compliance HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to >> you in error >> but does not contain patient information, please contact the >> sender and properly >> dispose of the e-mail. >> >> >> >> >> -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
