> Hi Doug, > > This is the terminal output. The output volumes don't seem to be smoothed. > > preproc-sess -s 8003 -fsd bold -stc up -fwhm 5 -per-run > -------------------------------------------------------------- > preproc-sess logfile is log/preproc-sess.8003.log > -------------------------------------------------------------- > $Id: preproc-sess,v 1.45.2.3 2013/01/22 22:09:10 greve Exp $ > mayucel > setenv FREESURFER_HOME /usr/local/freesurfer/stable5_2_0 > setenv SUBJECTS_DIR > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/ > Linux wiggum 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 > x86_64 x86_64 x86_64 GNU/Linux > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT > /usr/local/freesurfer/stable5_2_0/fsfast/bin/preproc-sess > -s 8003 -fsd bold -stc up -fwhm 5 -per-run > Tue Mar 12 11:01:41 EDT 2013 > instem f > mc 1 f fmcpr > stc 1 fmcpr fmcpr.up > sm 0 > mask 1 brain > 8003 Template ----------------------------- > mktemplate-sess -s 8003 -d > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT -fsd > bold -update > > Session: > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003 > ---------------- > Tue Mar 12 11:01:41 EDT 2013 > Detected input format at nii > 8003 Update not needed > Run: 001 ---------------- > Tue Mar 12 11:01:42 EDT 2013 > 8003 001 Update not needed > Run: 002 ---------------- > Tue Mar 12 11:01:42 EDT 2013 > 8003 002 Update not needed > Run: 003 ---------------- > Tue Mar 12 11:01:42 EDT 2013 > 8003 003 Update not needed > Run: 004 ---------------- > Tue Mar 12 11:01:42 EDT 2013 > 8003 004 Update not needed > Run: 005 ---------------- > Tue Mar 12 11:01:42 EDT 2013 > 8003 005 Update not needed > Tue Mar 12 11:01:42 EDT 2013 > mktemplate-sess completed > 8003 Mask ------------------------ > mkbrainmask-sess -maskstem brain -fsd bold -s 8003 -d > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT > -update > ------------------------------------------------ > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003 > Tue Mar 12 11:01:42 EDT 2013 > 8003 Update not needed for session-level mask > 8003 Update not needed for run 001 mask > 8003 Update not needed for run 001 meanval > 8003 Update not needed for run 002 mask > 8003 Update not needed for run 002 meanval > 8003 Update not needed for run 003 mask > 8003 Update not needed for run 003 meanval > 8003 Update not needed for run 004 mask > 8003 Update not needed for run 004 meanval > 8003 Update not needed for run 005 mask > 8003 Update not needed for run 005 meanval > Tue Mar 12 11:01:43 EDT 2013 > mkbrainmask-sess done > 8003 Registration ----------------------------- > register-sess -s 8003 -d > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT -fsd > bold -dof 6 -per-run -update > -------------------------------------------------------------- > register-sess logfile is > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/log/register-sess.8003.log > -------------------------------------------------------------- > Tue Mar 12 11:01:44 EDT 2013 > > setenv SUBJECTS_DIR > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/ > cd /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT > /usr/local/freesurfer/stable5_2_0/fsfast/bin/register-sess -s 8003 -d > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT -fsd > bold -dof 6 -per-run -update > > freesurfer-Linux-centos6_x86_64-stable-v5.2.0-20130302 > Linux wiggum 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 > x86_64 x86_64 x86_64 GNU/Linux > > Session: > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003 > ---------------- > Tue Mar 12 11:01:44 EDT 2013 > Run: 001 ---------------- > Tue Mar 12 11:01:44 EDT 2013 > Update not needed > Run: 002 ---------------- > Tue Mar 12 11:01:44 EDT 2013 > Update not needed > Run: 003 ---------------- > Tue Mar 12 11:01:44 EDT 2013 > Update not needed > Run: 004 ---------------- > Tue Mar 12 11:01:44 EDT 2013 > Update not needed > Run: 005 ---------------- > Tue Mar 12 11:01:44 EDT 2013 > Update not needed > Tue Mar 12 11:01:44 EDT 2013 > register-sess completed > 8003 MC ----------------------------- > mc-sess -fstem f -fmcstem fmcpr -s 8003 -d > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT -fsd > bold -per-run -update > Logfile is > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/log/mc-8003-bold.log > ------------------------------------------- > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003 > RunList: 001 002 003 004 005 > ------- ************************** ----------- > ------- Motion Correcting Run 001 ----------- > ------- ************************** ----------- > sess = 8003 > Tue Mar 12 11:01:45 EDT 2013 > mc-afni2 --i 001/f.nii --t 001/template.nii.gz --o 001/fmcpr.nii.gz > --mcdat 001/fmcpr.mcdat > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold > mri_info --nframes --o /tmp/mriinfo.45950 001/template.nii.gz > log file is 001/fmcpr.nii.gz.mclog > mcdat file is 001/fmcpr.mcdat > tmp dir is 001/tmp.mc-afni2.45950 > #@# -------------------------------- > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold > mri_convert 001/template.nii.gz 001/tmp.mc-afni2.45950/tempvol.nii.gz > --nskip 0 --ndrop 0 -odt float > mri_convert 001/template.nii.gz 001/tmp.mc-afni2.45950/tempvol.nii.gz > --nskip 0 --ndrop 0 -odt float > nskip = 0 > ndrop = 0 > $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ > reading from 001/template.nii.gz... > TR=3000.00, TE=0.00, TI=0.00, flip angle=0.00 > i_ras = (-0.99985, 0.00684944, -0.0159016) > j_ras = (-0.00597876, -0.998514, -0.0541706) > k_ras = (-0.016249, -0.0540675, 0.998405) > changing data type from short to float (noscale = 0)... > writing to 001/tmp.mc-afni2.45950/tempvol.nii.gz... > #@# -------------------------------- > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold > mri_convert 001/f.nii 001/tmp.mc-afni2.45950/invol.nii.gz -odt float > mri_convert 001/f.nii 001/tmp.mc-afni2.45950/invol.nii.gz -odt float > $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ > reading from 001/f.nii... > TR=3000.00, TE=0.00, TI=0.00, flip angle=0.00 > i_ras = (-0.99985, 0.00684944, -0.0159016) > j_ras = (-0.00597876, -0.998514, -0.0541706) > k_ras = (-0.016249, -0.0540675, 0.998405) > changing data type from short to float (noscale = 0)... > writing to 001/tmp.mc-afni2.45950/invol.nii.gz... > #@# -------------------------------- > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold > 3dvolreg.afni -verbose -dfile 001/fmcpr.mcdat -1Dmatrix_save 001/fmcpr.mat > -base 001/tmp.mc-afni2.45950/tempvol.nii.gz -prefix > 001/tmp.mc-afni2.45950/outvol.nii.gz 001/tmp.mc-afni2.45950/invol.nii.gz > ++ 3dvolreg: AFNI version=AFNI_2011_12_21_1014 (Aug 29 2012) [64-bit] > ++ Authored by: RW Cox > *+ WARNING: If you are performing spatial transformations on an oblique > dset, > such as 001/tmp.mc-afni2.45950/tempvol.nii.gz, > or viewing/combining it with volumes of differing obliquity, > you should consider running: > 3dWarp -deoblique > on this and other oblique datasets in the same session. > See 3dWarp -help for details. > ++ Oblique dataset:001/tmp.mc-afni2.45950/tempvol.nii.gz is 3.236461 > degrees from plumb. > ++ Reading in base dataset 001/tmp.mc-afni2.45950/tempvol.nii.gz > ++ Oblique dataset:001/tmp.mc-afni2.45950/invol.nii.gz is 3.236461 degrees > from plumb. > ++ Reading input dataset 001/tmp.mc-afni2.45950/invol.nii.gz > ++ Edging: x=3 y=3 z=0 > ++ Creating mask for -maxdisp > + Automask has 4078 voxels > + 2056 voxels left in -maxdisp mask after erosion > ++ Initializing alignment base > ++ Starting final pass on 121 sub-bricks: > 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120.. > ++ CPU time for realignment=0 s [=0 s/sub-brick] > ++ Min : roll=-0.197 pitch=-0.042 yaw=-0.035 dS=-0.011 dL=-0.802 > dP=-0.691 > ++ Mean: roll=+0.065 pitch=+0.003 yaw=-0.003 dS=+0.125 dL=-0.043 > dP=+0.070 > ++ Max : roll=+0.483 pitch=+0.219 yaw=+0.022 dS=+0.308 dL=+0.762 > dP=+0.524 > ++ Max displacements (mm) for each sub-brick: > 0.98 1.10 0.87 0.85 0.85 1.05 0.98 0.91 0.88 0.87 0.76 0.89 0.83 0.81 > 0.81 0.72 0.71 0.79 0.80 0.74 0.67 0.63 0.63 0.66 0.71 0.75 0.56 0.57 > 0.54 0.52 0.62 0.66 0.53 0.44 0.46 0.48 0.55 0.59 0.58 0.33 0.33 0.39 > 0.46 0.56 0.47 0.47 0.49 0.26 0.50 0.52 0.42 0.32 0.28 0.37 0.38 0.39 > 0.23 0.22 0.12 0.09 0.00 0.03 0.31 0.27 0.18 0.15 0.14 0.17 0.37 0.49 > 0.41 0.27 0.13 0.06 0.52 0.49 0.31 0.27 0.25 0.26 0.30 0.38 0.38 0.26 > 0.34 0.36 0.73 0.87 0.82 0.84 0.68 0.70 0.78 0.91 0.78 0.76 0.77 1.01 > 0.89 0.98 0.86 0.76 0.74 0.96 1.04 0.93 0.88 0.75 0.98 0.97 1.15 1.21 > 1.21 1.23 1.20 1.37 1.14 1.09 0.98 0.90 0.98 > ++ Max displacement in automask = 1.37 (mm) at sub-brick 115 > ++ Wrote dataset to disk in 001/tmp.mc-afni2.45950/outvol.nii.gz > #@# -------------------------------- > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold > mri_convert 001/tmp.mc-afni2.45950/outvol.nii.gz 001/fmcpr.nii.gz > --in_like 001/template.nii.gz > mri_convert 001/tmp.mc-afni2.45950/outvol.nii.gz 001/fmcpr.nii.gz > --in_like 001/template.nii.gz > reading info from 001/template.nii.gz... > $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ > reading from 001/tmp.mc-afni2.45950/outvol.nii.gz... > TR=3000.00, TE=0.00, TI=0.00, flip angle=0.00 > INFO: frames are not the same > i_ras = (-0.99985, 0.00684944, -0.0159016) > j_ras = (-0.00597876, -0.998514, -0.0541706) > k_ras = (-0.016249, -0.0540675, 0.998405) > writing to 001/fmcpr.nii.gz... > ... cleaning up .... > Tue Mar 12 11:01:55 EDT 2013 > mc-afni2 done > INFO: Making external regressor from mc params > mcdat2mcextreg --i 001/fmcpr.mcdat --o 001/mcprextreg > Tue Mar 12 11:01:56 EDT 2013 > > setenv SUBJECTS_DIR > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/ > cd > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold > /usr/local/freesurfer/stable5_2_0/fsfast/bin/mcdat2mcextreg --i > 001/fmcpr.mcdat --o 001/mcprextreg > > freesurfer-Linux-centos6_x86_64-stable-v5.2.0-20130302 > Linux wiggum 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 > x86_64 x86_64 x86_64 GNU/Linux > mri_glmfit --table > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/tmpdir.mcdat2extreg.46048/table.dat > --glmdir > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/tmpdir.mcdat2extreg.46048/glm > --osgm --y-out > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/tmpdir.mcdat2extreg.46048/y.out.nii > --pca > > $Id: mri_glmfit.c,v 1.196.2.8 2012/11/01 18:51:41 greve Exp $ > cwd > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold > cmdline mri_glmfit --table > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/tmpdir.mcdat2extreg.46048/table.dat > --glmdir > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/tmpdir.mcdat2extreg.46048/glm > --osgm --y-out > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/tmpdir.mcdat2extreg.46048/y.out.nii > --pca > sysname Linux > hostname wiggum > machine x86_64 > user mayucel > FixVertexAreaFlag = 1 > UseMaskWithSmoothing 1 > OneSampleGroupMean 1 > y > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/tmpdir.mcdat2extreg.46048/table.dat > logyflag 0 > usedti 0 > glmdir > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/tmpdir.mcdat2extreg.46048/glm > IllCondOK 0 > ReScaleX 1 > DoFFx 0 > Creating output directory > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/tmpdir.mcdat2extreg.46048/glm > Loading y from > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/tmpdir.mcdat2extreg.46048/table.dat > Found 6 data colums > Found 121 data rows > Saving design matrix to > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/tmpdir.mcdat2extreg.46048/glm/Xg.dat > Normalized matrix condition is 1 > Matrix condition is 1 > search space = 6.000000 > DOF = 120 > Starting fit and test > Fit completed in 0 minutes > Writing results > osgm > maxvox sig=40.7364 F=429.568 at index 3 0 0 seed=1363108614 > Measure:MC osgm > Tx 4.793 > Ty 0.672 > Tz -2.203 > Rx 40.736 > Ry -0.488 > Rz 5.441 > Computing PCA (121) > mri_glmfit done > ninputs = 1 > Checking inputs > nframestot = 121 > Allocing output > Done allocing > nframes = 121 > Computing PCA > Writing to > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/tmpdir.mcdat2extreg.46048/pca.nii > mcdat2mcextreg done > 8003 002 Update not needed > 8003 003 Update not needed > 8003 004 Update not needed > 8003 005 Update not needed > > > Tue Mar 12 11:02:02 EDT 2013 > mc-sess completed SUCCESSFULLY > 8003 STC ----------------------------- > stc-sess -i fmcpr -o fmcpr.up -so up -s 8003 -d > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT -fsd > bold -update > Tue Mar 12 11:02:02 EDT 2013 > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT > /usr/local/freesurfer/stable5_2_0/fsfast/bin/stc-sess > -i fmcpr -o fmcpr.up -so up -s 8003 -d > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT -fsd > bold -update > $Id: stc-sess,v 1.10 2011/02/24 20:19:03 greve Exp $ > wiggum > 8003 ----------------- > Tue Mar 12 11:02:02 EDT 2013 > --------------------------------------------- > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT > stc.fsl --i > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/fmcpr.nii.gz > --o > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/fmcpr.up.nii.gz > --up > Tue Mar 12 11:02:02 EDT 2013 > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT > /usr/local/freesurfer/stable5_2_0/fsfast/bin/stc.fsl > --i > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/fmcpr.nii.gz > --o > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/fmcpr.up.nii.gz > --up > $Id: stc.fsl,v 1.7.4.1 2011/03/28 20:38:31 greve Exp $ > wiggum > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT > mri_info --nslices --o > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/tmp.46180/nslices.dat > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/fmcpr.nii.gz > nslices = 6 > ---------- Slice Sequence --------------- > 1 > 2 > 3 > 4 > 5 > 6 > ----------------------------------------- > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT > mri_convert > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/fmcpr.nii.gz > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/tmp.46180/in.nii > mri_convert > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/fmcpr.nii.gz > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/tmp.46180/in.nii > $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ > reading from > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/fmcpr.nii.gz... > TR=3000.00, TE=0.00, TI=0.00, flip angle=0.00 > i_ras = (-0.99985, 0.00684944, -0.0159016) > j_ras = (-0.00597876, -0.998514, -0.0541706) > k_ras = (-0.016249, -0.0540675, 0.998405) > writing to > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/tmp.46180/in.nii... > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT > slicetimer.fsl -i > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/tmp.46180/in.nii > -o > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/tmp.46180/out.nii > --ocustom=/autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/tmp.46180/saof.dat > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT > mri_convert > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/tmp.46180/out.nii > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/fmcpr.up.nii.gz > mri_convert > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/tmp.46180/out.nii > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/fmcpr.up.nii.gz > $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ > reading from > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/tmp.46180/out.nii... > TR=3000.00, TE=0.00, TI=0.00, flip angle=0.00 > i_ras = (-0.99985, 0.00684944, -0.0159016) > j_ras = (-0.00597876, -0.998514, -0.0541706) > k_ras = (-0.016249, -0.0540675, 0.998405) > writing to > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/001/fmcpr.up.nii.gz... > stc.fsl Done > -rw-rw-r-- 1 mayucel mayucel 10896975 Mar 5 10:11 > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/002/fmcpr.up.nii.gz > -rw-rw-r-- 1 mayucel mayucel 10684000 Mar 5 10:10 > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/002/fmcpr.nii.gz > Update not needed > -rw-rw-r-- 1 mayucel mayucel 10897860 Mar 5 10:11 > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/003/fmcpr.up.nii.gz > -rw-rw-r-- 1 mayucel mayucel 10682045 Mar 5 10:10 > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/003/fmcpr.nii.gz > Update not needed > -rw-rw-r-- 1 mayucel mayucel 10890231 Mar 5 10:11 > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/004/fmcpr.up.nii.gz > -rw-rw-r-- 1 mayucel mayucel 10641066 Mar 5 10:10 > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/004/fmcpr.nii.gz > Update not needed > -rw-rw-r-- 1 mayucel mayucel 18130123 Mar 5 10:12 > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/005/fmcpr.up.nii.gz > -rw-rw-r-- 1 mayucel mayucel 17829350 Mar 5 10:10 > /autofs/cluster/bartman/1/users/mayucel/DATA-HYPERCAPNIA-2012/PROJECT/8003/bold/005/fmcpr.nii.gz > Update not needed > Started at Tue Mar 12 11:02:02 EDT 2013 > Ended at Tue Mar 12 11:02:10 EDT 2013 > stc-sess Done > ---------------------------------------- > Started at Tue Mar 12 11:01:41 EDT 2013 > Ended at Tue Mar 12 11:02:10 EDT 2013 > preproc-sess done > > >
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