OK will do... I'll upload both versions, before and after recon-all ran. I am beginning to think it's an issue with the script that I am running... I'm looking at another brain and there are areas I did not touch at all where white matter voxels are being added or removed...
On Dec 12, 2012, at 11:33 AM, Bruce Fischl wrote: > Hi Jon > > if you upload this subject we'll take a look > Bruce > > > On Wed, 12 Dec 2012, Jonathan Holt wrote: > >> I've had this happen a handful of times and I'm wondering what I can do >> about it. For reference using Freesurfer 5.0.0. >> >> Edited a brain and ran "recon-all -autorecon2 -autorecon3 -s subj_id" which >> completed without error. The resulting brain had chunks of missing auxiliary >> volume in areas that I had not touched at all. This is bizarre and I am not >> sure what to do about it. Images of said issue attached of both main and >> auxiliary volumes. >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
