Hi Susan, mri_glmfit-sim did not exist in 4.X. If you want to use 4.X, then you'll need to run mri_glmfit with the simulation options. If I were you, I would install a version of 5.X. You can run the glm and MC simulations using 5.X on data created by 4.X, just don't rerun recon-all using 5.X doug
On 01/07/2013 04:29 PM, Susan Alice McLaughlin wrote: > Hi, > > I am trying to run a Monte Carlo simulation on functional data constrained to > a label using Freesurfer 4.0.1. I did not use Qdec for data analysis. > > Looking at a previous post - > https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2010-November/016290.html > - I see that I should: 1) constrain when running mri_glmfit, then 2) use > mri_glmfit-sim (as opposed to running mri_glmfit with the simulation options). > > I have done step 1, however when I try to mri_glmfit-sim, I receive a > "command not found" message. Is mri_glmfit-sim not available in 4.0.1? Can I > copy a workable version of mri_glmfit-sim into 4.0.1? > > Thanks, > > Susan McLaughlin > Doctoral Candidate > SPACE Lab (Stimulus-Parametric Imaging of Auditory Cortex) > Dept. of Speech and Hearing Sciences > University of Washington > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
