Hi folks, When issuing a recon-all command, I'm seeing the following message:
set: Variable name must contain alphanumeric characters recon-all stalls and doesn't move forward (doesn't even create the subject directory). I'm using Freesurfer 5.3.0 (freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0) on Ubuntu 12.04.2. In fact, we just upgraded to this version of Ubuntu from an older version of Mandriva and to this latest version of Freesurfer. recon-all did not produce this message before these two upgrades. Any help you can offer would be most appreciated! Thanks in advance. Best, Heather -- Heather L. Urry, Ph.D. Department of Psychology Tufts University 490 Boston Avenue Medford, MA 02155 email: [email protected] phone: 617-627-3733 fax: 617-627-3181 http://ase.tufts.edu/psychology/ebbl
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