p.s. thanks Matt Bruce On Wed, 22 Jan 2014, Glasser, Matthew wrote:
> AFI is a bias transmit scan, not an MPRAGE. Look for T1w. > > On 1/22/14 11:44 AM, "Bruce Fischl" <[email protected]> wrote: > >> Hi Al, >> >> can you run mri_info on 100307_3T_AFI.nii? Is that an AFI scan? I'm not >> familiar with their naming convention. I'll cc Matt Glasser who can >> probably help. >> >> cheers >> Bruce >> On Wed, 22 Jan 2014, Alfred Ochs wrote: >> >>> Hello folks, >>> >>> I am attempting to run FreeSurfer (v5.1) on a downloaded NifTI >>> structural T1 >>> MRI from the Human Connectome Project, in particular >>> 100307_3T_AFI.nii. Unless I am mistaken, their preprocessed data >>> doesn't >>> include aseg data, at least identified in a manner I am familiar >>> with. Nevertheless, recon-all -s 100307_cs -all reports: >>> >>> ERROR: input(s) cannot have multiple frames! >>> /Applications/freesurfer/subjects/100307_cs/mri/orig/001.mgz has 2 >>> frames. >>> >>> How do I work around this? >>> >>> Thanks, Al >>> >>> Alfred L. Ochs, Ph.D. >>> Virginia Institute for Neuropsychiatry >>> Richmond, Virginia >>> >>> >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. > > > ________________________________ > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you are > not the intended recipient, be advised that any unauthorized use, disclosure, > copying or the taking of any action in reliance on the contents of this > information is strictly prohibited. If you have received this email in error, > please immediately notify the sender via telephone or return mail. > > > _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
