Hi Satra - We've been talking about a 5.3.1, yes. On my end, it would
include the tracula updates that are currently available and possibly some
more (I've been working on some improvements to longitudinal tracula).
Not sure about libnetcdf but this is a good time to add things to the wish
list :)
a.y
On Fri, 4 Apr 2014, Satrajit Ghosh wrote:
hi folks,
we are setting up freesurfer on a new cluster and trying to be as modular as
possible in terms of dependencies. at present we are only installing 5.3.0 +
tracula updates.
will libnetcdf (required by tracula) be included in freesurfer? or is it
considered a dependency?
and talking of which, is there a patch (a 5.3.1) in the horizon which will
include the tracula updates and perhaps netcdf in the freesurfer download.
cheers,
satra
On Wed, Feb 5, 2014 at 11:07 PM, Satrajit Ghosh <sa...@mit.edu> wrote:
update: the lack of libnetcdf eventually makes it fail.
i found a libnetcdf.so.7 on the cluster and soft linked it to
libnetcdf.so.6 and added the path to LD_LIBRARY_PATH.
that let trac-all -prep run to completion.
cheers,
satra
On Wed, Feb 5, 2014 at 9:02 PM, Satrajit Ghosh <sa...@mit.edu> wrote:
hi a.y.,
when running trac-preproc i'm getting this error (for
dmri_motion and dmri_group), but it continues running:
/software/freesurfer/bin/dmri_motion: error while loading shared
libraries: libnetcdf.so.6: cannot open shared object file: No
such file or directory
what will this fail to do?
also is libnetcdf now a dependency for freesurfer? the reason i
ask is that i'm running this on a remote cluster for which i
don't have admin privileges.
cheers,
satra
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