Dear Anastasia et al.
I have data DTI that has multiple b-values. I worked around this by
skipping '-tensor', and sym linking 'mean_fsumsamples.nii.gz' to
'dtifit_FA.nii.gz'. However, at the end of 'trac-path', there is an
error thrown. Specifically when 'dmri_pathstats' is called, because it
is looking for dtifit_{L1, L2, L3, V1, ...}. Do you have a workaround
for this? Should I just run dtifit on the data?
Also, merged_avg33_mni_bbr.nii.gz wasn't created, but I was able to
create it (I copied the code from around line 400 of 'trac-paths'). When
I view it with freeview, though, there is a light blue/greenish
background. I assume those voxels are supposed to be 0's, but for some
reason aren't here?
Thanks,
Chris
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