Cut-and-paste the following info into your FreeSurfer problem report: ---------------------------------------------------------------------
FREESURFER_HOME: /usr/local/freesurfer Build stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 Debian version: jessie/sid Kernel info: Linux 3.13.0-30-generic x86_64 --------------------------------------------------------------------- Please include the following additional information in your report: 1) subject name 2) the entire command-line executed 3) the error message generated 4) optionally include the subject's /script/recon-all.log See also: http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting recon-all -i dicom/9999/1.dcm -s 9999 cd 9999/mri/orig and mri_convert -ot mgz /pat/dicom/9999/1.dcm 001.mgz with the same results knut j On 07/05/2014 12:36 PM, Knut J Bjuland wrote: > Dear FreeSurfers, > > I have imported several dicom files with recon-all -i -subjid id. All > files were imported correctly, apart from one subjects. When I try to > convert it direcelty with mri_convert -ot mgz dicom/9999/1.dcm -s 9999 > > I get this error message. > > WARNING: files are not found to be different and cannot be sorted > File1: ../../../../dicom/9999/162.dcm > File2: ../../../../dicom/9999/2.dcm > > When I process the subject with recon-all -s 9999 -all. I got this message. > > WARNING > ==================++++++++++++++++++++++++======================================= > The physical sizes are (240.00 mm, 240.00 mm, 384.00 mm), which cannot > fit in 256^3 mm^3 volumes. > The resulting volume will have 384 slices. > If you find problems, please let us know (freesurfer@nmr.mgh.harvard.edu) > > > Can you please advise me how to import the dicom files? Should I convert > them to nifti. Will this affect the end results compared to the other > subjects that were imported correctly? > > > Knut J > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
