Hi Bruce
mri_info The output is as following. Please tell me if you need the dicom.
Thank you for your attention.
Knut J
mri_info /home/freesurfer/subjects/dicom/9999/1.dcm
INFO: Found 324 files in /home/freesurfer/subjects/dicom/9999
INFO: Scanning for Series Number 17
INFO: found 320 files in series
INFO: Scanning for Series Number 17
INFO: found 320 files in series
RunNo = 16
Getting Series No
Scanning Directory
INFO: loading series header info.
INFO: sorting.
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/1.dcm
File2: /home/freesurfer/subjects/dicom/9999/161.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/10.dcm
File2: /home/freesurfer/subjects/dicom/9999/170.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/178.dcm
File2: /home/freesurfer/subjects/dicom/9999/18.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/179.dcm
File2: /home/freesurfer/subjects/dicom/9999/19.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/180.dcm
File2: /home/freesurfer/subjects/dicom/9999/20.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/181.dcm
File2: /home/freesurfer/subjects/dicom/9999/21.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/182.dcm
File2: /home/freesurfer/subjects/dicom/9999/22.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/183.dcm
File2: /home/freesurfer/subjects/dicom/9999/23.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/184.dcm
File2: /home/freesurfer/subjects/dicom/9999/24.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/162.dcm
File2: /home/freesurfer/subjects/dicom/9999/2.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/11.dcm
File2: /home/freesurfer/subjects/dicom/9999/171.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/12.dcm
File2: /home/freesurfer/subjects/dicom/9999/172.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/13.dcm
File2: /home/freesurfer/subjects/dicom/9999/173.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/14.dcm
File2: /home/freesurfer/subjects/dicom/9999/174.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/15.dcm
File2: /home/freesurfer/subjects/dicom/9999/175.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/16.dcm
File2: /home/freesurfer/subjects/dicom/9999/176.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/17.dcm
File2: /home/freesurfer/subjects/dicom/9999/177.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/243.dcm
File2: /home/freesurfer/subjects/dicom/9999/83.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/244.dcm
File2: /home/freesurfer/subjects/dicom/9999/84.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/245.dcm
File2: /home/freesurfer/subjects/dicom/9999/85.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/246.dcm
File2: /home/freesurfer/subjects/dicom/9999/86.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/247.dcm
File2: /home/freesurfer/subjects/dicom/9999/87.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/248.dcm
File2: /home/freesurfer/subjects/dicom/9999/88.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/249.dcm
File2: /home/freesurfer/subjects/dicom/9999/89.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/250.dcm
File2: /home/freesurfer/subjects/dicom/9999/90.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/251.dcm
File2: /home/freesurfer/subjects/dicom/9999/91.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/252.dcm
File2: /home/freesurfer/subjects/dicom/9999/92.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/253.dcm
File2: /home/freesurfer/subjects/dicom/9999/93.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/254.dcm
File2: /home/freesurfer/subjects/dicom/9999/94.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/255.dcm
File2: /home/freesurfer/subjects/dicom/9999/95.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/256.dcm
File2: /home/freesurfer/subjects/dicom/9999/96.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/257.dcm
File2: /home/freesurfer/subjects/dicom/9999/97.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/258.dcm
File2: /home/freesurfer/subjects/dicom/9999/98.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/259.dcm
File2: /home/freesurfer/subjects/dicom/9999/99.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/163.dcm
File2: /home/freesurfer/subjects/dicom/9999/3.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/164.dcm
File2: /home/freesurfer/subjects/dicom/9999/4.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/165.dcm
File2: /home/freesurfer/subjects/dicom/9999/5.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/166.dcm
File2: /home/freesurfer/subjects/dicom/9999/6.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/167.dcm
File2: /home/freesurfer/subjects/dicom/9999/7.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/168.dcm
File2: /home/freesurfer/subjects/dicom/9999/8.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/169.dcm
File2: /home/freesurfer/subjects/dicom/9999/9.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/185.dcm
File2: /home/freesurfer/subjects/dicom/9999/25.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/186.dcm
File2: /home/freesurfer/subjects/dicom/9999/26.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/187.dcm
File2: /home/freesurfer/subjects/dicom/9999/27.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/188.dcm
File2: /home/freesurfer/subjects/dicom/9999/28.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/189.dcm
File2: /home/freesurfer/subjects/dicom/9999/29.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/190.dcm
File2: /home/freesurfer/subjects/dicom/9999/30.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/191.dcm
File2: /home/freesurfer/subjects/dicom/9999/31.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/192.dcm
File2: /home/freesurfer/subjects/dicom/9999/32.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/193.dcm
File2: /home/freesurfer/subjects/dicom/9999/33.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/194.dcm
File2: /home/freesurfer/subjects/dicom/9999/34.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/195.dcm
File2: /home/freesurfer/subjects/dicom/9999/35.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/196.dcm
File2: /home/freesurfer/subjects/dicom/9999/36.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/197.dcm
File2: /home/freesurfer/subjects/dicom/9999/37.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/198.dcm
File2: /home/freesurfer/subjects/dicom/9999/38.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/199.dcm
File2: /home/freesurfer/subjects/dicom/9999/39.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/200.dcm
File2: /home/freesurfer/subjects/dicom/9999/40.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/201.dcm
File2: /home/freesurfer/subjects/dicom/9999/41.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/202.dcm
File2: /home/freesurfer/subjects/dicom/9999/42.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/203.dcm
File2: /home/freesurfer/subjects/dicom/9999/43.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/204.dcm
File2: /home/freesurfer/subjects/dicom/9999/44.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/205.dcm
File2: /home/freesurfer/subjects/dicom/9999/45.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/206.dcm
File2: /home/freesurfer/subjects/dicom/9999/46.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/207.dcm
File2: /home/freesurfer/subjects/dicom/9999/47.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/208.dcm
File2: /home/freesurfer/subjects/dicom/9999/48.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/209.dcm
File2: /home/freesurfer/subjects/dicom/9999/49.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/210.dcm
File2: /home/freesurfer/subjects/dicom/9999/50.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/211.dcm
File2: /home/freesurfer/subjects/dicom/9999/51.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/212.dcm
File2: /home/freesurfer/subjects/dicom/9999/52.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/213.dcm
File2: /home/freesurfer/subjects/dicom/9999/53.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/214.dcm
File2: /home/freesurfer/subjects/dicom/9999/54.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/215.dcm
File2: /home/freesurfer/subjects/dicom/9999/55.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/216.dcm
File2: /home/freesurfer/subjects/dicom/9999/56.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/217.dcm
File2: /home/freesurfer/subjects/dicom/9999/57.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/218.dcm
File2: /home/freesurfer/subjects/dicom/9999/58.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/219.dcm
File2: /home/freesurfer/subjects/dicom/9999/59.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/220.dcm
File2: /home/freesurfer/subjects/dicom/9999/60.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/221.dcm
File2: /home/freesurfer/subjects/dicom/9999/61.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/222.dcm
File2: /home/freesurfer/subjects/dicom/9999/62.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/223.dcm
File2: /home/freesurfer/subjects/dicom/9999/63.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/224.dcm
File2: /home/freesurfer/subjects/dicom/9999/64.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/225.dcm
File2: /home/freesurfer/subjects/dicom/9999/65.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/226.dcm
File2: /home/freesurfer/subjects/dicom/9999/66.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/227.dcm
File2: /home/freesurfer/subjects/dicom/9999/67.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/228.dcm
File2: /home/freesurfer/subjects/dicom/9999/68.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/229.dcm
File2: /home/freesurfer/subjects/dicom/9999/69.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/230.dcm
File2: /home/freesurfer/subjects/dicom/9999/70.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/231.dcm
File2: /home/freesurfer/subjects/dicom/9999/71.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/232.dcm
File2: /home/freesurfer/subjects/dicom/9999/72.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/233.dcm
File2: /home/freesurfer/subjects/dicom/9999/73.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/234.dcm
File2: /home/freesurfer/subjects/dicom/9999/74.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/235.dcm
File2: /home/freesurfer/subjects/dicom/9999/75.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/236.dcm
File2: /home/freesurfer/subjects/dicom/9999/76.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/237.dcm
File2: /home/freesurfer/subjects/dicom/9999/77.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/238.dcm
File2: /home/freesurfer/subjects/dicom/9999/78.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/239.dcm
File2: /home/freesurfer/subjects/dicom/9999/79.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/240.dcm
File2: /home/freesurfer/subjects/dicom/9999/80.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/241.dcm
File2: /home/freesurfer/subjects/dicom/9999/81.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/242.dcm
File2: /home/freesurfer/subjects/dicom/9999/82.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/100.dcm
File2: /home/freesurfer/subjects/dicom/9999/260.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/101.dcm
File2: /home/freesurfer/subjects/dicom/9999/261.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/102.dcm
File2: /home/freesurfer/subjects/dicom/9999/262.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/103.dcm
File2: /home/freesurfer/subjects/dicom/9999/263.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/104.dcm
File2: /home/freesurfer/subjects/dicom/9999/264.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/105.dcm
File2: /home/freesurfer/subjects/dicom/9999/265.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/106.dcm
File2: /home/freesurfer/subjects/dicom/9999/266.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/107.dcm
File2: /home/freesurfer/subjects/dicom/9999/267.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/108.dcm
File2: /home/freesurfer/subjects/dicom/9999/268.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/109.dcm
File2: /home/freesurfer/subjects/dicom/9999/269.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/110.dcm
File2: /home/freesurfer/subjects/dicom/9999/270.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/111.dcm
File2: /home/freesurfer/subjects/dicom/9999/271.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/112.dcm
File2: /home/freesurfer/subjects/dicom/9999/272.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/113.dcm
File2: /home/freesurfer/subjects/dicom/9999/273.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/114.dcm
File2: /home/freesurfer/subjects/dicom/9999/274.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/115.dcm
File2: /home/freesurfer/subjects/dicom/9999/275.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/116.dcm
File2: /home/freesurfer/subjects/dicom/9999/276.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/117.dcm
File2: /home/freesurfer/subjects/dicom/9999/277.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/118.dcm
File2: /home/freesurfer/subjects/dicom/9999/278.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/119.dcm
File2: /home/freesurfer/subjects/dicom/9999/279.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/120.dcm
File2: /home/freesurfer/subjects/dicom/9999/280.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/121.dcm
File2: /home/freesurfer/subjects/dicom/9999/281.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/122.dcm
File2: /home/freesurfer/subjects/dicom/9999/282.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/123.dcm
File2: /home/freesurfer/subjects/dicom/9999/283.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/124.dcm
File2: /home/freesurfer/subjects/dicom/9999/284.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/125.dcm
File2: /home/freesurfer/subjects/dicom/9999/285.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/126.dcm
File2: /home/freesurfer/subjects/dicom/9999/286.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/127.dcm
File2: /home/freesurfer/subjects/dicom/9999/287.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/128.dcm
File2: /home/freesurfer/subjects/dicom/9999/288.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/129.dcm
File2: /home/freesurfer/subjects/dicom/9999/289.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/130.dcm
File2: /home/freesurfer/subjects/dicom/9999/290.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/131.dcm
File2: /home/freesurfer/subjects/dicom/9999/291.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/132.dcm
File2: /home/freesurfer/subjects/dicom/9999/292.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/133.dcm
File2: /home/freesurfer/subjects/dicom/9999/293.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/134.dcm
File2: /home/freesurfer/subjects/dicom/9999/294.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/135.dcm
File2: /home/freesurfer/subjects/dicom/9999/295.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/136.dcm
File2: /home/freesurfer/subjects/dicom/9999/296.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/137.dcm
File2: /home/freesurfer/subjects/dicom/9999/297.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/138.dcm
File2: /home/freesurfer/subjects/dicom/9999/298.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/139.dcm
File2: /home/freesurfer/subjects/dicom/9999/299.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/140.dcm
File2: /home/freesurfer/subjects/dicom/9999/300.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/141.dcm
File2: /home/freesurfer/subjects/dicom/9999/301.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/142.dcm
File2: /home/freesurfer/subjects/dicom/9999/302.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/143.dcm
File2: /home/freesurfer/subjects/dicom/9999/303.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/144.dcm
File2: /home/freesurfer/subjects/dicom/9999/304.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/145.dcm
File2: /home/freesurfer/subjects/dicom/9999/305.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/146.dcm
File2: /home/freesurfer/subjects/dicom/9999/306.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/147.dcm
File2: /home/freesurfer/subjects/dicom/9999/307.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/148.dcm
File2: /home/freesurfer/subjects/dicom/9999/308.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/149.dcm
File2: /home/freesurfer/subjects/dicom/9999/309.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/150.dcm
File2: /home/freesurfer/subjects/dicom/9999/310.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/151.dcm
File2: /home/freesurfer/subjects/dicom/9999/311.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/152.dcm
File2: /home/freesurfer/subjects/dicom/9999/312.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/153.dcm
File2: /home/freesurfer/subjects/dicom/9999/313.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/154.dcm
File2: /home/freesurfer/subjects/dicom/9999/314.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/155.dcm
File2: /home/freesurfer/subjects/dicom/9999/315.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/156.dcm
File2: /home/freesurfer/subjects/dicom/9999/316.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/157.dcm
File2: /home/freesurfer/subjects/dicom/9999/317.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/158.dcm
File2: /home/freesurfer/subjects/dicom/9999/318.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/159.dcm
File2: /home/freesurfer/subjects/dicom/9999/319.dcm
WARNING: files are not found to be different and cannot be sorted
File1: /home/freesurfer/subjects/dicom/9999/160.dcm
File2: /home/freesurfer/subjects/dicom/9999/320.dcm
INFO: (192 192 320), nframes = 1, ismosaic=0
PE Dir ROW ROW
AutoAlign matrix detected
AutoAlign Matrix ---------------------
1.000 0.000 0.000 0.000;
0.000 1.000 0.000 0.000;
0.000 0.000 1.000 0.000;
0.000 0.000 0.000 1.000;
Volume information for 1.dcm
type: siemens_dicom
dimensions: 192 x 192 x 320
voxel sizes: 1.2500, 1.2500, 1.2000
type: SHORT (4)
fov: 192.000
dof: 0
xstart: -96.0, xend: 96.0
ystart: -96.0, yend: 96.0
zstart: -160.0, zend: 160.0
TR: 2400.00 msec, TE: 3.61 msec, TI: 1000.00 msec, flip
angle: 8.00 degrees
nframes: 1
PhEncDir: ROW
ras xform present
xform info: x_r = -0.1052, y_r = 0.0617, z_r = -0.9925, c_r =
-87.9477
: x_a = -0.9944, y_a = -0.0065, z_a = 0.1050, c_a
= 32.3012
: x_s = -0.0000, y_s = -0.9981, z_s = -0.0620, c_s =
-29.8398
Orientation : PIL
Primary Slice Direction: sagittal
voxel to ras transform:
-0.1315 0.0771 -1.1910 107.8465
-1.2431 -0.0082 0.1260 132.2527
-0.0000 -1.2476 -0.0744 101.8353
0.0000 0.0000 0.0000 1.0000
voxel-to-ras determinant -1.875
ras to voxel transform:
-0.0842 -0.7956 -0.0000 114.2937
0.0493 -0.0052 -0.7985 76.6815
-0.8271 0.0875 -0.0517 82.8883
0.0000 0.0000 0.0000 1.0000
On 07/05/2014 03:46 PM, Bruce Fischl wrote:
> Hi Knut
>
> can you run mri_info on that dicom file?
>
> thanks
> Bruce
> On Sat, 5 Jul 2014, Knut J Bjuland
> wrote:
>
>> Cut-and-paste the following info into your FreeSurfer problem report:
>> ---------------------------------------------------------------------
>>
>> FREESURFER_HOME: /usr/local/freesurfer
>>
>> Build stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0
>>
>> Debian version: jessie/sid
>>
>> Kernel info: Linux 3.13.0-30-generic x86_64
>>
>> ---------------------------------------------------------------------
>> Please include the following additional information in your report:
>>
>> 1) subject name
>> 2) the entire command-line executed
>> 3) the error message generated
>> 4) optionally include the subject's /script/recon-all.log
>>
>> See also: http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>>
>> recon-all -i dicom/9999/1.dcm -s 9999
>>
>>
>> cd 9999/mri/orig
>> and mri_convert -ot mgz /pat/dicom/9999/1.dcm 001.mgz with the same results
>>
>> knut j
>>
>>
>>
>>
>>
>> On 07/05/2014 12:36 PM, Knut J Bjuland wrote:
>>> Dear FreeSurfers,
>>>
>>> I have imported several dicom files with recon-all -i -subjid id. All
>>> files were imported correctly, apart from one subjects. When I try to
>>> convert it direcelty with mri_convert -ot mgz dicom/9999/1.dcm -s 9999
>>>
>>> I get this error message.
>>>
>>> WARNING: files are not found to be different and cannot be sorted
>>> File1: ../../../../dicom/9999/162.dcm
>>> File2: ../../../../dicom/9999/2.dcm
>>>
>>> When I process the subject with recon-all -s 9999 -all. I got this message.
>>>
>>> WARNING
>>> ==================++++++++++++++++++++++++=======================================
>>> The physical sizes are (240.00 mm, 240.00 mm, 384.00 mm), which cannot
>>> fit in 256^3 mm^3 volumes.
>>> The resulting volume will have 384 slices.
>>> If you find problems, please let us know (freesurfer@nmr.mgh.harvard.edu)
>>>
>>>
>>> Can you please advise me how to import the dicom files? Should I convert
>>> them to nifti. Will this affect the end results compared to the other
>>> subjects that were imported correctly?
>>>
>>>
>>> Knut J
>>>
>>>
>>> _______________________________________________
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>>>
>>>
>>> The information in this e-mail is intended only for the person to whom it is
>>> addressed. If you believe this e-mail was sent to you in error and the
>>> e-mail
>>> contains patient information, please contact the Partners Compliance
>>> HelpLine at
>>> http://www.partners.org/complianceline . If the e-mail was sent to you in
>>> error
>>> but does not contain patient information, please contact the sender and
>>> properly
>>> dispose of the e-mail.
>>>
>>>
>>>
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>>
>>
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