Dear all,
I've run selxavg3-sess and I got this error message when it tried to
read the fmcsm file (fmc.sm5.DM.lh.nii.gz).
Thank you for your help,
Francesca
shalim-ubuntu:/usr/local/freesurfer/fsfast/MeytalRetinotopy>
selxavg3-sess -a rtopy.DM.lh -s SUBJ01
Surface data DM lh
--------------------------------------------------------------
selxavg3-sess logfile is
/usr/local/freesurfer/fsfast/MeytalRetinotopy/log/selxavg3-sess-bold-rtopy.DM.lh-140828163352.log
--------------------------------------------------------------
-------------------------------------------
/usr/local/freesurfer/fsfast/MeytalRetinotopy/SUBJ01
Thu Aug 28 16:33:53 IDT 2014
anadir = /usr/local/freesurfer/fsfast/MeytalRetinotopy/SUBJ01/bold/rtopy.DM.lh
DoGLMFit = 1
DoContrasts = 1
UpdateNeeded = 1
------------------------------------------
------- matlab output --------------------
No window system found. Java option 'MWT' ignored.
Warning: Unable to open display 'iconic'. You will not be able to
display graphics on the screen.
Warning: No window system found. Java option 'MWT' ignored.
< M A T L A B (R) >
Copyright 1984-2013 The MathWorks, Inc.
R2013b (8.2.0.701) 64-bit (glnxa64)
August 13, 2013
To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit www.mathworks.com.
>> >> >> >> >> >> >>
sxa3pwd =
/usr/local/freesurfer/fsfast/MeytalRetinotopy
>>
sxa3cmd =
/usr/local/freesurfer/fsfast/bin/selxavg3-sess -a rtopy.DM.lh -s SUBJ01
>> /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m
>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >>
#@# SUBJ01 ###############################
/usr/local/freesurfer/fsfast/MeytalRetinotopy/SUBJ01
-------------------------
$Id: fast_selxavg3.m,v 1.100.2.2 2012/11/30 18:40:38 greve Exp $
/usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m
/usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m
/usr/local/freesurfer/fsfast/MeytalRetinotopy/MRIread.m
-------------------------
outtop = /usr/local/freesurfer/fsfast/MeytalRetinotopy
Extension format = nii.gz
ERROR: cannot determine format of
/usr/local/freesurfer/fsfast/MeytalRetinotopy/SUBJ01/bold/001/fmcsm5
ERROR: attempting to read
/usr/local/freesurfer/fsfast/MeytalRetinotopy/SUBJ01/bold/001/fmcsm5
------------------------------------------
ERROR: fast_selxavg3() failed\n
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
